BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15260.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471720 jgi|Araly1|471720|fgenesh2_kg.1__1674__AT1G15260.1 1199 0.0
> Ahg471720 jgi|Araly1|471720|fgenesh2_kg.1__1674__AT1G15260.1
Length=805
Score = 1199 bits (649), Expect = 0.0
Identities = 761/813 (94%), Gaps = 15/813 (2%)
Strand=Plus/Plus
Query 1 ATGTTAGGTTTCCTTTTGAGATCCCTAGTGACATAAATATGGTTATCTTCTCaaaaaaaT 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGGTTTCCTTTTGAGCTCCCTAGTAACATAAATATGGTTATCTTCTCAAAAAAAT 60
Query 61 GAGCAGCAAGAAAGATGATGAAACCTACATCAAAATCAATTCAGAGAGTTGGTCGTTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GAGCAGCAAGAAAGATGATGAAACCTACATCAAAATCAATTCAGAGAGTTGGACGTTTCT 120
Query 121 TAAAGAAGACTCTTGGGAGCATCAAGTCCACTATCTGCTCTAGTGATTACAAAAACTTAC 180
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TGAAGAAGACTCTTGGGAGCATCAAGTCCACTATCTGCTCTGGTGATTACAAAAACTTAC 180
Query 181 CTAACGACACTCCTCTCTTGAGCCCTTACTCCTGCAGCCGCCGCTGTCCAGAAGATTCCC 240
||||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 181 CTAACAACACTCCTCTCTTGAGCCCCAACTCCTGCAGCCGCGGCTATCCAGAAGATTCCC 240
Query 241 AAACCCAAACCAAAGAAAGCTACACCGTTATCTGTTGTGACACGGCTGTGGCAGATACAA 300
||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAACC-AAA-----GAAACCTACACCGTTCTCTGTTGTGACACGGCTGTGGCAGATACAA 294
Query 301 CACACCAGAAGAGTCTCAACAACCAACATAAAAAGAAACCGAAGAAAGTCGCTGAGCCAT 360
|||||||||||||||||| |||||||| ||||||||||||||||||| |||| | |||||
Sbjct 295 CACACCAGAAGAGTCTCAGCAACCAACCTAAAAAGAAACCGAAGAAAATCGCAGTGCCAT 354
Query 361 TCGAGGATGCAAAGAAAAGAGGTGACGCGTTGGCGCAAAAGATGAAAGATCTCAATATGG 420
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 355 TCGAGGATGCTAAGAAAAGAGGTGACGCATTGGCGCAAAAGATGAAAGATCTCAACATGG 414
Query 421 TGGATCTGAGAGACGTGGATCACGCATTGGATGTAAGGGAAGCGCTTCGATGCTATTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGGATCTGAGAGACGTGGATCACGCATTGGATGTAAGGGAAGCGCTTCGATGCTATTCAA 474
Query 481 GCATCAGAAGTCCTGTGTATCTTGACATTGTTGACAATTTCTTCACAGACATGTATTACG 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCATCAGAAGTCCTGTGTACCTTGACATTGTTGACAATTTCTTCACAGACATGTATTACG 534
Query 541 AGTTCTCTGATCCTCGTACCTCTGCTAAGATCAACGGTTCAAGGAGAAAGGCAGGCTCCT 600
||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 535 AGTTCTCTGATCCGCGCACCTCTGCTAAGATCAACGGTTCAAGAAAAAAGGCAGGCTCCT 594
Query 601 TCAGGCTTTAAAGTTCCTCTGGATCAGCTTTGCTTT-CA--C--GGGCTATCTGTAGTTC 655
||||||| ||||||||||||| || ||||||||||| | | ||||||| ||||| |
Sbjct 595 TCAGGCTCTAAAGTTCCTCTGAATGAGCTTTGCTTTGCTTTCATGGGCTATATGTAGCTA 654
Query 656 TTTCATCTATAGAGTATGCACTTCTTAAGAACAGT-GTTAACCATTACACACACCGCTTT 714
|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 655 TTTCATCTATCGAGTATGCACTTCTTAAGAACAGTTGTTAGCCATTACACACACCGATTT 714
Query 715 GGTAAAATCACCTGTCACCACCCTCAGTTTCTACCTCATCTTGTAGAGTCAAGTTACGCT 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 715 GGTAAAATCACCTGTCACCAACCTCAGTTTCTACCTCATCTTGTAGAGTCAAGTTACCCT 774
Query 775 CCTATTCTCAACTACTATCAATGCAACATATTT 807
|||||||||||||| | |||||||||||||||
Sbjct 775 CCTATTCTCAACTA-T--CAATGCAACATATTT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5