BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15270.1

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471721 jgi|Araly1|471721|fgenesh2_kg.1__1675__AT1G15270.1         643    0.0  


> Ahg471721 jgi|Araly1|471721|fgenesh2_kg.1__1675__AT1G15270.1
Length=441

 Score =  643 bits (348),  Expect = 0.0
 Identities = 387/404 (96%), Gaps = 10/404 (2%)
 Strand=Plus/Plus

Query  22   ATTCGATACCGTCTGCAACTCTCAGCTACTTTTTCCCC-AATTTTGAGCTCAACATCGAA  80
            |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct  1    ATTCGATACCGTCTGCAACTCTCAGCTACTTTTTCCCCAAATTCTGAGCTCAACATCGAA  60

Query  81   CCCTAGCTCAACGAA-C---CAATCATGTCTTCCAAGCAAGGAGGAAAGGCGAAACCTTT  136
            ||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCCTAGCTCAACGAACCAATCAATCATGTCTTCCAAGCAAGGAGGAAAGGCGAAACCTTT  120

Query  137  GAAGCAGCCTAAAGCTGATAAGAAGGAATACGACGAGACTGACTTAGCTAACATTCAGAA  196
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  GAAGCAGCCAAAAGCTGATAAGAAGGAATACGACGAGACGGACTTAGCTAACATTCAGAA  180

Query  197  GAAGAAAGATGAGGAAAAGGCCCTTAAAGAGCTTAGAGCCAAGGCATCGCAGAAGGGATC  256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGAAAGATGAGGAAAAGGCCCTTAAAGAGCTTAGAGCCAAGGCATCGCAGAAGGGATC  240

Query  257  CTTTGGAGGTTCTGGACTTAAGAAGAGTGGCAAGAAATGATCCGTTTTATCCATGAAGTG  316
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  241  CTTTGGAGGTTCTGGACTTAAGAAGAGCGGCAAGAAATGATCCGTTTTATCCATGAAGTG  300

Query  317  TGTTTTAAAATGCAAATTTATCAAGTGaaaaaaaCAGATAATCCTGTGTTGATGTAACTT  376
            ||||  ||||||||||||||||||||||||||| ||||||||| |||  |||||||||||
Sbjct  301  TGTT--AAAATGCAAATTTATCAAGTGAAAAAA-CAGATAATCGTGTCATGATGTAACTT  357

Query  377  TTTATCATAATTCGAGA-A-GAGTAACTTCGCTTCTCCATACAT  418
            ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  358  TTTATCATAATTCGAGAGAAGAGTAACTTCGCTTCTCCATACAT  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17360792995


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5