BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15280.2
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471723 jgi|Araly1|471723|fgenesh2_kg.1__1677__AT1G15280.2 2785 0.0
> Ahg471723 jgi|Araly1|471723|fgenesh2_kg.1__1677__AT1G15280.2
Length=2239
Score = 2785 bits (1508), Expect = 0.0
Identities = 2074/2325 (89%), Gaps = 127/2325 (5%)
Strand=Plus/Plus
Query 17 TTCATTGGAAACCCCCAAAATCGC---TGAA-GAACGCCTCT-CGAGCTCAGATAGGGTT 71
|||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||
Sbjct 1 TTCATTGGAAACCCCCAAAATCGCAGAAGAACGAACGCCTCTGGGAGCTGAGATAGGGTT 60
Query 72 TA--TAGGTTTCTAGAGAGAATTTCATGGCGACAT-CTGAA---GCGGAATATGAGAGTG 125
|| || ||||||||||||||||| |||||||| | ||||| ||||||||||||||||
Sbjct 61 TAGGTACGTTTCTAGAGAGAATTT-ATGGCGAC-TGCTGAAGCGGCGGAATATGAGAGTG 118
Query 126 ATCCCGAGGAGCTGAACCGCTCCTTGGCGACGAGGAGGAGAGAAGCGAGTGATGACGATA 185
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 119 ATCCCGAGGAGCTGAACCGCTCCTTGGCCACGAGGAGGAGAGAAGCAAGTGATGACGATA 178
Query 186 GTGATGATGATG-ATGCTGTTAGAGATG-TGAAAAATCAGAGGGCTGTGGTTGATTCTGA 243
||||||||| || || ||| |||||||| || ||||| ||||||||| ||||||||||||
Sbjct 179 GTGATGATGCTGAAT-CTGATAGAGATGTTG-AAAATAAGAGGGCTGAGGTTGATTCTGA 236
Query 244 CCTATCTGATGAAGAAG-TTGGTACTGTGAAGTATGATAATGACGAAGATGGGGAGGATA 302
||||||||||| || || ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 237 CCTATCTGATG-AGCAGATTGATACTGTCAAGTATGATAATGACGAAGATGGGGAGGATA 295
Query 303 GTTATGAGGATGATGAGGAGGA-AAGTG--GTGGAGGAATCGATAATGATAAGAGTGGTG 359
||| |||||| || |||||||| || | |||| ||||||||| |||| ||||
Sbjct 296 GTTTTGAGGAGGAGGAGGAGGAGGAGGGACGTGGTGGAATCGATGATGACAAGA------ 349
Query 360 TGGTGAAGGAGGCTGGTGATATGAATGGAGAGGAAGAAAATGAAAAGGAGAAGTTACAAG 419
| | || | | | ||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct 350 --G-G-AGTA-G-T-GTG--ATGAATGGAGACGAAGAAAAAGAAAAGGAGAAGCAACAAG 400
Query 420 CTGCTGTTCCCACTGGTGGAGCTTTTTATATGCATGATGATAGGTTTCAGGAAATGTCTG 479
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TTGCAGTTCCCACAGGTGGAGCTTTTTATATGCATGATGATAGGTTTCAGGAAATGTCTG 460
Query 480 CTGGCGGAAACAGGCGAATGCGTGGTGGGAGAAGACAGTGGGGCTCTGGAGAGGAAAGAA 539
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 461 CTGCCGGAAACAGGCGAATGCGTGGTGGGAGAAGACAGTGGGGATCTGGAGAGGAAAGAA 520
Query 540 AATGGGGACATGACAAATTTGAAGAGATGAATACTGGGGAAAAACATTCTGATCAGAGGA 599
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 521 AATGGGGACATGACAAATTTGAAGAGATGAATACTGGAGAAAAACATTATGATCAGAGGA 580
Query 600 TGTCTAGAGGCCGATTCAGAGGTCATGGTCGGGGTAGGGGACAAGGGCGTGGATACGCTA 659
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 581 TGTCTAGAGGCCGACTCAGAGGTCGTGGTCGGGGTAGGGGACAAGGGCGTGGATACGCTA 640
Query 660 GAGGGAGCAGTTCTAACACATTAACCAGTAGTGGACAGCAAATTTATGTTCCTAAAGCTG 719
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 641 GAGGGAGCAGTTCTAACACATTAGCCAGTAATGGACAGCAAATTTATGTTCCTAAAGCTG 700
Query 720 TCTCACGAGGGAGAGGACCCAGGAAATCCGACACTCCCCTGAGGAATGAAAATCAAGCAC 779
|||||||||||||||| || ||||||||||| |||||||||||||||||||| | ||||
Sbjct 701 TCTCACGAGGGAGAGGGCCTAGGAAATCCGAGACTCCCCTGAGGAATGAAAAGCTAGCAA 760
Query 780 ATTCTGAGCAAAGCAAACAGTTACGAAATTCTAATGGGTCTCAAAACTCTCGTGAGAAAA 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ATTCCGAGCAAAGCAAACAGTTACGAAATTCTAATGGGTCTCAAAACTCTCGTGAGAAAA 820
Query 840 TGCCACACCTCGATTCACGGCGTTCACCAACTGCCCCTGCTAAAACTGAGAATCAAGGTG 899
|| || | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TG-------TC-A--CAC--CGTTCACCAACTGCCCCTGCTAAAACTGAGAATCAAGGTG 868
Query 900 CCCATGCCAAAAAGAATGTAGCTGTGTCAAGTTTGAGTTCCGCTTCTCCTCCATTTTATC 959
||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||
Sbjct 869 TCCATGCCAAAAAGAATGTAGCAGCGTCAAGTTTGAGCTCTGCTTCTCCTCCATTTTATC 928
Query 960 CTTCAGCG-CCGTCCAGTAATGTGGTACATGGTATACAAGTTAGTATGGAAAGACTCCAC 1018
|||||| | || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 929 CTTCAGTGACC-TCCAGTAATGTGGTACATGGTATACAAGTTGGTATGGAAAGACTCCAC 987
Query 1019 ACAAATGAAAGTG-TCACGCCTTCTGGGAAGAAGTATAGGAATACAAAATCCGGTTATTC 1077
|| |||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 988 ACGAATGAAAGTGGTG-CGCCTTCTGGGAAGAAGTATAGGAATACAAAGTCCGGTTTTTC 1046
Query 1078 ACCAGTTTGGACTGCCAAGACTCTTCAGTCCACTAGTCAAGGTAGAGGTGCACCTGCTGC 1137
| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1047 ATCAGTTTGGACTGCCAAGACTCTTCAGTCCTCTAATCAAGGTAGAGATGCACCTGCTGC 1106
Query 1138 TGGGAACACGTTTTACCCGCAATCTCATAGTCAAGGTGACAGATTTTCATCACCAATGCA 1197
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1107 TGGGAACATGTTTTACCCGCAATCTCATAGTCAAGGTGACAGATTTTCATCACAAATGCA 1166
Query 1198 ACTCAATGGAGATTCAAAAGGCACTGGCCAAAG----A-----CCTTCCGGCCAGGGTTT 1248
||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1167 ACTCAATGGAGATTCAAAAGGCACTGGCCAAAGCTTTATTAGACCTTCTGGCCAGGGTTT 1226
Query 1249 TGATCAGCACTCTGCTGTTGTTAGATCATTGTCTTCCTCTCCCCAGAAAACTAGCTTATC 1308
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGATCAGCACTCTGCTGTTGTCAGATCATTGTCTTCCTCTCCCCAGAAAACTAGCTTATC 1286
Query 1309 AAGAAATCGGTATCCTCCT-GATGAAATAGAATCTTCATCGGAAACAGCTGCATTGATTG 1367
|||||||| |||||||||| | |||| |||||||| ||||| |||||| | |||||||||
Sbjct 1287 AAGAAATCAGTATCCTCCTAG-TGAAGTAGAATCTGCATCGAAAACAGGTTCATTGATTG 1345
Query 1368 CTAAAGGAAAAGGGACTCTCAGGCCTGGTGGAAGCAGCTCTTTTATGTATAGTGGATCCC 1427
|||||||||||| |||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1346 CTAAAGGAAAAGAGACTATCCGGCCTAGTGGAAGCGGCTCTTTTATGTATAGTGGATCCC 1405
Query 1428 AAATGATGGGGCGGCCAGAAAGTTTGACATCTGCTGACAATTCTAATTTCCCTACTTTTC 1487
||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||
Sbjct 1406 AAATGATGGGGCGGCCAGAAAGTCTGGCATCTGCGGACAATTCTAATTTCCATACTTTTC 1465
Query 1488 TGCCTGTTATGCAATTTGGTGGTCAGCATGGTGGGGTTCCGACTTTTGGAATGGCTTATC 1547
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1466 TGCCTGTTATGCAATTTGGTGGTCAGCATGGTGGGGTTCCGACTTTAGGAATGGCTTATC 1525
Query 1548 CAGGATATGTCCAGTCTGAAGATGGTGTTAGAAATCCGGAGATGACATGGATGCCAGTTT 1607
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1526 CAGGATATGTCCAGTCTGAAAATGGTGTTAGAAATCCGGAGATGACATGGATGCCAGTTT 1585
Query 1608 T-AGCTGGTCCAGGAGCTTTAGGGGCTTCATACAGTCCACCACCATATGCGGCTCACCAA 1666
| | ||||||||||||||||||||||||||||||||||| | ||||||||| | |||
Sbjct 1586 TGAA-TGGTCCAGGAGCTTTAGGGGCTTCATACAGTCCACTA---TATGCGGCTAATCAA 1641
Query 1667 GCACACAACCCAGGGTTACCTTCCTCTGCGGGATTCTCCAGCAAAGACAGTAGCACAAAT 1726
||| |||| ||||||||| |||| || | | | ||| | | |||| |||||
Sbjct 1642 GCAAACAAGCCAGGGTTATCTTCTTC--CAA-AG-----A-CAAT-A-A-TAGCGCAAAT 1689
Query 1727 ACCCTTAATGACCTGGTCAAACCCATGGAAAGTCCTGAGGTTGCAGAGAATGGGGTTTCA 1786
|| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1690 ACTCTTAATGACCTCGTCAAACCCACGGAAAGACCTGAGGTTGCAGAGAATGGGGTTTCA 1749
Query 1787 GAACGGCAAAGCAACAATCCAAGCAAGCAGCCTCGTAGGTACTCGGAGATGACCTTTAGC 1846
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 CAACGGCAAGGCAACAACCCAAGCAAGCAGCCTCGTAGGTACTCGGAGATGACCTTTAGC 1809
Query 1847 AAGTGAAAACATTTGTGAGAATTTAAGAAGGGACTTTAGGGACACCTTGGCGCAGGGCTA 1906
|||||| ||||||||||||||||||||||| || ||||||||| ||||| |||| |||||
Sbjct 1810 AAGTGATAACATTTGTGAGAATTTAAGAAGAGAGTTTAGGGACTCCTTGACGCAAGGCTA 1869
Query 1907 TGTTGCTTCTCCAAGCTTTGTTACAGAACACTTTTAAGGCCGCAATTGTTCCTGAAAATC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 TGTTGCTTCTCCAAGCTTTGTTACAGAACACTTTTAAGGCCGCAATTGTTCCTGAAAATC 1929
Query 1967 TTAGTTTTATAAGGGAAGGGaaaaaaaaaCAAAAGATAATAGTAACGACTACTAGTAGCA 2026
||| ||||||||||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct 1930 CTAGGTTTATAAGGGA-GGGAAAAAAA--CAAAAGATAATACTA-CGACTACTAGTAGCA 1985
Query 2027 AATAGAATGGAGAAGGGACGTAGTGGCTCATATAAAGCTATGGGAGATGTAATGTATTTG 2086
||||||||||||| ||||||| ||||||||||||||||||||| | | |
Sbjct 1986 AATAGAATGGAGATGGGACGTGGTGGCTCATATAAAGCTATGG----T-T--T------- 2031
Query 2087 TGTTTCGTGTTTTCCGTCATCTGCTTGTTTGGTATTTTACCATTTTAAGCTATTTTCAGG 2146
||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2032 -----CGTGTTTTCGGTCATCTGCTTGTTTGGTAATTTACCATTT-AAGCTATTTTCAGG 2085
Query 2147 AGACTAGTTGTCCTAAA-CTTTGGTCAGCATCCTGTTTTGTGTGTCtttt-tttt-t--- 2200
| |||||||||| |||| |||||||||||| ||||||| ||||||||||| |||| |
Sbjct 2086 AAACTAGTTGTC-TAAAACTTTGGTCAGCAGCCTGTTTGGTGTGTCTTTTATTTTATTTT 2144
Query 2201 --CCGA-GAATCTAATCTAAAGT-CTCTCTTTTGAGCATGTAAATATTTGTCGCAATGTT 2256
|||| |||||| |||||||| |||| ||||||||||||| |||||||| || |
Sbjct 2145 TTCCGAAGAATCTTATCTAAAGCACTCTATTTTGAGCATGTATATATTTGTTGC---G-- 2199
Query 2257 ATTTCATTTGTTTTC-TTCCTATGGAATCACATGAATAGGAGCTT 2300
| | || ||||| ||||||||||||||||| ||| |||||||
Sbjct 2200 A----AGTT-TTTTCCTTCCTATGGAATCACATAAATTGGAGCTT 2239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5