BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15310.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911335 jgi|Araly1|911335|Al_scaffold_0001_1589 1742 0.0
Ahg923242 jgi|Araly1|923242|scaffold_104523.1 1618 0.0
Ahg923241 jgi|Araly1|923241|scaffold_104522.1 1618 0.0
Ahg359800 jgi|Araly1|359800|fgenesh1_pg.C_scaffold_1105000001 137 2e-31
> Ahg911335 jgi|Araly1|911335|Al_scaffold_0001_1589
Length=1335
Score = 1742 bits (943), Expect = 0.0
Identities = 1112/1190 (93%), Gaps = 26/1190 (2%)
Strand=Plus/Plus
Query 380 GAAAG-CCTGCCTTTGCCCCCAAAAAGGCCAAACC---TAGTGTAGTGATGTTCGTCGGT 435
||||| |||| |||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 154 GAAAGACCTGTCTTTGCTCCCAAAAAGGCCAAACCTAGTAGTGTAGTTATGTTCGTCGGG 213
Query 436 TTACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TTACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAA 273
Query 496 GGGTACAAAGCAGCTCTAGTGTGTGCGGATACTTTCAGGGCCGGTGCTTTTGATCAGCTG 555
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 274 GGGTACAAAACAGCTCTAGTGTGTGCAGATACTTTCAGGGCCGGTGCTTTCGATCAGCTC 333
Query 556 AAACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 AAACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCT 393
Query 616 GTGAAAATTGCTGTTGAGGGAGTTGATAGGTTCAAGAAAGAAAAGTGTGATCTTATTATT 675
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 394 GTGAAAATTGCTGCTGAGGGAGTTGATAGGTTCAAGAAAGAAAAATGTGATCTTATTATT 453
Query 676 GTTGACACCAGTGGTCGCCATAAACAAGCAGCTTCTCTCTTTGAAGAAATGCGTCAAGTT 735
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 454 GTTGACACCAGTGGTCGCCATAAACAAGAAGCTTCTCTCTTTGAAGAAATTCTTCAAGTT 513
Query 736 GCTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GCTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCT 573
Query 796 GCATTTGAACAAGCTGAAGCTTTTAAGGAAACTGTATCTGTTGGAGCTGTAATTATTACT 855
|||||||| |||||| |||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 574 GCATTTGATCAAGCTCAAGCATTTAAGCAAACTGTATCTGTTGGAGCTGTTATTATTACT 633
Query 856 AAGATGGACGGCCATGCCAAGGGAGGTGGTGCTCTTAGCGCTGTTGCAGCTACAAAAAGT 915
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 634 AAGATGGACGGCCATGCCAAGGGGGGTGGTGCTCTTAGCGCTGTAGCAGCTACAAAAAGT 693
Query 916 CCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGACGTTAAA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 694 CCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGATGTCAAA 753
Query 976 CCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAA 1035
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 754 CCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGAATAAACTACAA 813
Query 1036 GAGGTGGTACCTAAAGATCTACAGAATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTT 1095
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 814 GAGGTGGTACCTAAAGATCTACAGCATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTT 873
Query 1096 ACGTTGAGAAGTATGTACGACCAGTTCCAGTGCTCTCTGCGGATTCCACTTAATCAG--C 1153
|||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||| |
Sbjct 874 ACGTTGAGAACTATGTACGACCAGTTCCAGTGTTCTCTGCAGATTCCTCTTAATCAGGTC 933
Query 1154 ----T-T-TTCT-CGAT-GCT-GCCTGGAATTAGTGCTGAAATGATGCCGAAAGGACATG 1204
| | || | | || | | ||||| | | ||||||| ||||||||||||||||||
Sbjct 934 AGAATCTCTTGTTCAATAG-TAGCCTGTACC-ATTGCTGAATTGATGCCGAAAGGACATG 991
Query 1205 GTGAAGAAAGCCGAGTGAAGATGAAGCGATACATGACAATGATGGATTCTATGACAAATA 1264
|||| |||||||||| ||||| || ||||||||||||||||||||||||||| |||
Sbjct 992 GTGACGAAAGCCGAGCGAAGA-GA-----TACATGACAATGATGGATTCTATGACAGATA 1045
Query 1265 AAGAACTTGACAGCCCAAACCCAAAGATTTTTAACGAGTCAAGGATAATGAGGATAGCGA 1324
||||||| |||||| ||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 1046 AAGAACTGGACAGCTCAAACACAAAGGTGTTTAACGAGTCAAGGATAATGCGGATAGCGA 1105
Query 1325 GAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGATGTTGGAAGAGTACAAGAGGATAG 1384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1106 GAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGTTGTTGGAAGAGTACAAGAGGAAAG 1165
Query 1385 CAAAGACAATGAAAGGGATCAAGATCCCAAAGAACGGAGACATGAGCAA---GGTCATAC 1441
||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1166 CAAAGACTATGAAAGGAATCAAGATCCCAAAGAATGGAGACATGAGCAACAAGGTCATAC 1225
Query 1442 CGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGCAGAGTCTCATGAAGCAGA 1501
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1226 CGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGCAGAGTCTGATGAAGCAGA 1285
Query 1502 TGGGTTCGGCTAAGGACATGATGGGAATGTTTGGTGGCGGAGGCAAGTAG 1551
|||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1286 TGGGTTCGGCTAAGGACATGATGGGAATGTTTAGTGGCGGAGACAAGTAG 1335
Score = 239 bits (129), Expect = 6e-62
Identities = 144/151 (95%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 194 TGAATGATTTCTTAAACGAGATTACTCGCGCTTTGCTCCAGTCCGATGTTTCTTTTGGCC 253
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TGAATGATTGCTTAAACGAGATTACTCGCGCTTTGCTCCAGTCCGATGTTTCTTTTCCCC 61
Query 254 TTGTGGAAA-AGATGCAGACCAATATTAAGAAGATCGTTAACCTCGACGATCTAGCAGCT 312
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTGT-GAAAGAGATGCAGACCAATATTAAGAAGATCGTTAACCTCGACGATCTAGCAGCT 120
Query 313 GGCCACAACAAACGCCTGATCATCGAGCAGG 343
|||||||||||||| |||||||| |||||||
Sbjct 121 GGCCACAACAAACGGCTGATCATTGAGCAGG 151
> Ahg923242 jgi|Araly1|923242|scaffold_104523.1
Length=1533
Score = 1618 bits (876), Expect = 0.0
Identities = 1195/1346 (89%), Gaps = 33/1346 (2%)
Strand=Plus/Plus
Query 109 aaaaTGGTGTTGGCGGAGCTCGGCGGCCGGATAACCCGCGCCATACAGCAGATGAACAAT 168
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 20 AAAATGGTGTTGGCGGAGCTAGGCGGGCGGATTACCCGCGCGATACAGCAGATGAGCAAT 79
Query 169 GTGACAATAATCGATGAAAAGGTTTTGAATG-ATTTCTTAAACGAGATTACTCGCGCTTT 227
|||||||| |||||||| |||| |||||||| || | || |||||||| ||||| ||| |
Sbjct 80 GTGACAATTATCGATGAGAAGGCTTTGAATGAATGT-TTGAACGAGATCACTCGTGCTCT 138
Query 228 GCTCCAGTCCGATGTTTCTTTTGGC-CTTGTGGAA-AAGATGCAGACCAATATTAAGAAG 285
||| || ||||||||||| ||| | ||||| ||| ||||||||| ||||| ||||||
Sbjct 139 GCTTCAATCCGATGTTTCGTTT-CCTCTTGT-GAAGGAGATGCAGAGTAATATCAAGAAG 196
Query 286 ATCGTTAACCTCGACGATCTAGCAGCTGGCCACAACAAACGCCTGATCATCGAGCAGGCT 345
||||| || || || |||||||||||||| ||||||||||||| |||||| || ||||||
Sbjct 197 ATCGTCAATCTTGAAGATCTAGCAGCTGGTCACAACAAACGCCGGATCATTGAACAGGCT 256
Query 346 ATCTTCAAG-GAACTCTGTAGGATGCTGGATCCAGGAAAGCCTGCCTTTGCCCCCAAAAA 404
||||| || ||||| |||| |||| ||||||||||||||||||| ||||| || |||||
Sbjct 257 ATCTT-TAGTGAACTTTGTAAGATGTTGGATCCAGGAAAGCCTGCGTTTGCTCCTAAAAA 315
Query 405 GGCCAAACCTAGTGTAGTGATGTTCGTCGGTTTACAAGGTGCTGGAAAAACCACAACATG 464
||| ||| |||||||||| ||||| || || ||||||||||||||||| || ||||| ||
Sbjct 316 GGCTAAAGCTAGTGTAGTTATGTTTGTTGGATTACAAGGTGCTGGAAAGACGACAACTTG 375
Query 465 TACCAAGTATGCTTACTATCATCAGAAGAAAGGGTACAAAGCAGCTCTAGTGTGTGCGGA 524
||| ||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 376 TACTAAGTATGCTTATTATCATCAGAAGAAAGGATACAAACCAGCCCTAGTTTGTGCGGA 435
Query 525 TACTTTCAGGGCCGGTGCTTTTGATCAGCTGAAACAGAATGCCACCAAGGCTAAGATCCC 584
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 436 TACTTTCAGGGCCGGTGCTTTCGATCAGCTGAAACAGAATGCTACCAAGGCTAAGATCCC 495
Query 585 CTTTTATGGAAGCTACACAGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATAG 644
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTTTTATGGAAGCTACACGGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATAC 555
Query 645 GTTCAAGAAAGAAAAGTGTGATCTTATTATTGTTGACACCAGTGGTCGCCATAAACAAGC 704
||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct 556 GTTTAAGAAAGAAAACTGTGATCTCATTATTGTTGATACTAGTGGTCGCCATAAACAAGA 615
Query 705 AGCTTCTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGGAACCAGATCTTGTTAT 764
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 616 AGCTACTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGAAACCAGATCTTGTTAT 675
Query 765 ATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGAACAAGCTGAAGCTTTTAAGGA 824
||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
Sbjct 676 ATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCTCAAGCCTTTAAGCA 735
Query 825 AACTGTAT-CTGTTGGAGCTGTAATTATTACTAAGATGGACGGCCATGCCAAGGGAGGTG 883
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 736 AAGTGT-TGCTGTTGGAGCTGTAATTATTACTAAGATGGACGGCCATGCCAAGGGTGGTG 794
Query 884 GTGCTCTTAGCGCTGTTGCAGCTACAAAAAGTCCTGTGATATTCATTGGAACAGGAGAGC 943
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 795 GTGCTCTTAGCGCTGTTGCAGCTACGAAAAGTCCTGTGATATTTATCGGAACAGGAGAGC 854
Query 944 ATATGGATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTCAGCCGTCTCTTAGGAAAGG 1003
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 855 ATATGGATGAGTTTGAAGTGTTTGACGTCAAACCATTTGTTAGCCGTCTCTTAGGAATGG 914
Query 1004 GTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTGGTACCTAAAGATCTACAGAATG 1063
|||| ||||||||| | || ||||| ||||||||||| ||||||||||||| |||| ||
Sbjct 915 GTGACTGGTCTGGATTTGTTGATAAGCTACAAGAGGTAGTACCTAAAGATCAACAGCCTG 974
Query 1064 AACTTGTAGAAAATCTCTCTCAGGGTAACTTTACGTTGAGAAGTATGTACGACCAGTTCC 1123
||||| | ||||| |||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 975 AACTTCTGGAAAAGCTCTCTCAGGGTAACTTTACATTGAGAATTATGTACGACCTGTTCC 1034
Query 1124 AGTGCTCT-CTG--C--GGATTCCACTTAATCAGCTTTTCTCGATGCTGCCTGGAATTAG 1178
|| | | ||| | || | |||||||| || |||||||||||||||||||||||||
Sbjct 1035 AGAA-TATACTGAACATGGGT-CCACTTAAGGAGGTTTTCTCGATGCTGCCTGGAATTAG 1092
Query 1179 TGCTGAAATGATGCCGAAAGGACATGGTGAA-GAAAGCCGAGT-GAAGATGAAGCGATAC 1236
||||||||||||||| |||||||||| ||| ||||||| || |||||| ||||| |||
Sbjct 1093 TGCTGAAATGATGCCAAAAGGACATGA-GAAAGAAAGCC-AGGCGAAGATAAAGCGGTAC 1150
Query 1237 ATGACAATGATGGATTCTATGACAAATAAAGAACTTGACAGCCCAAACCCAAAGATTTTT 1296
||||||||||||||||||||||||||| | ||||| |||||| ||||||||||| | |||
Sbjct 1151 ATGACAATGATGGATTCTATGACAAATGATGAACTGGACAGCTCAAACCCAAAGGTGTTT 1210
Query 1297 AACGAGTCAAGGATAATGAGGATAGCGAGAGGGTCAGGGAGGTTAGTAAGAGAAGTGATG 1356
||||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1211 AACGAGTCACGGATGATGCGGATAGCAAGAGGGTCAGGGAGGCAAGTAAGAGAAGTGATG 1270
Query 1357 GAGATGTTGGAAGAGTACAAGAGGAT---AGCAAAGA-------CAA--TGAAAGGGATC 1404
|||||||||||||||||||||||| | |||||||| ||| |||||||| ||
Sbjct 1271 GAGATGTTGGAAGAGTACAAGAGGCTGCTAGCAAAGATATGGAGCAAGATGAAAGGGCTC 1330
Query 1405 AAGATCCCAAAGAACGGAGACATGAG 1430
|||||||||||||| ||||| |||||
Sbjct 1331 AAGATCCCAAAGAATGGAGATATGAG 1356
Score = 189 bits (102), Expect = 6e-47
Identities = 127/139 (91%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1424 ACATGAGCAAGGTCATACCGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGC 1483
|||||||||||||| ||||||| |||||||| || ||||| || |||||| |||||||||
Sbjct 1386 ACATGAGCAAGGTCCTACCGCCGCAGATGCTCAAGCAGATTGGTGGCATGGGCGGTCTGC 1445
Query 1484 AGAGTCTCATGAAGCAGATGGGTT-CGGCTAAGGACATGATGGGAATGTTTGGTGGCGGA 1542
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 1446 AGAGTCTCATGAAGCAGATGGGTTCCGGC-AAGGACATGATGGGAATGTTCGGTGGCGGA 1504
Query 1543 GGCAAGTAGTTTCTATCTT 1561
| |||||||||||| ||||
Sbjct 1505 GACAAGTAGTTTCTTTCTT 1523
> Ahg923241 jgi|Araly1|923241|scaffold_104522.1
Length=1533
Score = 1618 bits (876), Expect = 0.0
Identities = 1195/1346 (89%), Gaps = 33/1346 (2%)
Strand=Plus/Plus
Query 109 aaaaTGGTGTTGGCGGAGCTCGGCGGCCGGATAACCCGCGCCATACAGCAGATGAACAAT 168
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 20 AAAATGGTGTTGGCGGAGCTAGGCGGGCGGATTACCCGCGCGATACAGCAGATGAGCAAT 79
Query 169 GTGACAATAATCGATGAAAAGGTTTTGAATG-ATTTCTTAAACGAGATTACTCGCGCTTT 227
|||||||| |||||||| |||| |||||||| || | || |||||||| ||||| ||| |
Sbjct 80 GTGACAATTATCGATGAGAAGGCTTTGAATGAATGT-TTGAACGAGATCACTCGTGCTCT 138
Query 228 GCTCCAGTCCGATGTTTCTTTTGGC-CTTGTGGAA-AAGATGCAGACCAATATTAAGAAG 285
||| || ||||||||||| ||| | ||||| ||| ||||||||| ||||| ||||||
Sbjct 139 GCTTCAATCCGATGTTTCGTTT-CCTCTTGT-GAAGGAGATGCAGAGTAATATCAAGAAG 196
Query 286 ATCGTTAACCTCGACGATCTAGCAGCTGGCCACAACAAACGCCTGATCATCGAGCAGGCT 345
||||| || || || |||||||||||||| ||||||||||||| |||||| || ||||||
Sbjct 197 ATCGTCAATCTTGAAGATCTAGCAGCTGGTCACAACAAACGCCGGATCATTGAACAGGCT 256
Query 346 ATCTTCAAG-GAACTCTGTAGGATGCTGGATCCAGGAAAGCCTGCCTTTGCCCCCAAAAA 404
||||| || ||||| |||| |||| ||||||||||||||||||| ||||| || |||||
Sbjct 257 ATCTT-TAGTGAACTTTGTAAGATGTTGGATCCAGGAAAGCCTGCGTTTGCTCCTAAAAA 315
Query 405 GGCCAAACCTAGTGTAGTGATGTTCGTCGGTTTACAAGGTGCTGGAAAAACCACAACATG 464
||| ||| |||||||||| ||||| || || ||||||||||||||||| || ||||| ||
Sbjct 316 GGCTAAAGCTAGTGTAGTTATGTTTGTTGGATTACAAGGTGCTGGAAAGACGACAACTTG 375
Query 465 TACCAAGTATGCTTACTATCATCAGAAGAAAGGGTACAAAGCAGCTCTAGTGTGTGCGGA 524
||| ||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 376 TACTAAGTATGCTTATTATCATCAGAAGAAAGGATACAAACCAGCCCTAGTTTGTGCGGA 435
Query 525 TACTTTCAGGGCCGGTGCTTTTGATCAGCTGAAACAGAATGCCACCAAGGCTAAGATCCC 584
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 436 TACTTTCAGGGCCGGTGCTTTCGATCAGCTGAAACAGAATGCTACCAAGGCTAAGATCCC 495
Query 585 CTTTTATGGAAGCTACACAGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATAG 644
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTTTTATGGAAGCTACACGGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATAC 555
Query 645 GTTCAAGAAAGAAAAGTGTGATCTTATTATTGTTGACACCAGTGGTCGCCATAAACAAGC 704
||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct 556 GTTTAAGAAAGAAAACTGTGATCTCATTATTGTTGATACTAGTGGTCGCCATAAACAAGA 615
Query 705 AGCTTCTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGGAACCAGATCTTGTTAT 764
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 616 AGCTACTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGAAACCAGATCTTGTTAT 675
Query 765 ATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGAACAAGCTGAAGCTTTTAAGGA 824
||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
Sbjct 676 ATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCTCAAGCCTTTAAGCA 735
Query 825 AACTGTAT-CTGTTGGAGCTGTAATTATTACTAAGATGGACGGCCATGCCAAGGGAGGTG 883
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 736 AAGTGT-TGCTGTTGGAGCTGTAATTATTACTAAGATGGACGGCCATGCCAAGGGTGGTG 794
Query 884 GTGCTCTTAGCGCTGTTGCAGCTACAAAAAGTCCTGTGATATTCATTGGAACAGGAGAGC 943
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 795 GTGCTCTTAGCGCTGTTGCAGCTACGAAAAGTCCTGTGATATTTATCGGAACAGGAGAGC 854
Query 944 ATATGGATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTCAGCCGTCTCTTAGGAAAGG 1003
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 855 ATATGGATGAGTTTGAAGTGTTTGACGTCAAACCATTTGTTAGCCGTCTCTTAGGAATGG 914
Query 1004 GTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTGGTACCTAAAGATCTACAGAATG 1063
|||| ||||||||| | || ||||| ||||||||||| ||||||||||||| |||| ||
Sbjct 915 GTGACTGGTCTGGATTTGTTGATAAGCTACAAGAGGTAGTACCTAAAGATCAACAGCCTG 974
Query 1064 AACTTGTAGAAAATCTCTCTCAGGGTAACTTTACGTTGAGAAGTATGTACGACCAGTTCC 1123
||||| | ||||| |||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 975 AACTTCTGGAAAAGCTCTCTCAGGGTAACTTTACATTGAGAATTATGTACGACCTGTTCC 1034
Query 1124 AGTGCTCT-CTG--C--GGATTCCACTTAATCAGCTTTTCTCGATGCTGCCTGGAATTAG 1178
|| | | ||| | || | |||||||| || |||||||||||||||||||||||||
Sbjct 1035 AGAA-TATACTGAACATGGGT-CCACTTAAGGAGGTTTTCTCGATGCTGCCTGGAATTAG 1092
Query 1179 TGCTGAAATGATGCCGAAAGGACATGGTGAA-GAAAGCCGAGT-GAAGATGAAGCGATAC 1236
||||||||||||||| |||||||||| ||| ||||||| || |||||| ||||| |||
Sbjct 1093 TGCTGAAATGATGCCAAAAGGACATGA-GAAAGAAAGCC-AGGCGAAGATAAAGCGGTAC 1150
Query 1237 ATGACAATGATGGATTCTATGACAAATAAAGAACTTGACAGCCCAAACCCAAAGATTTTT 1296
||||||||||||||||||||||||||| | ||||| |||||| ||||||||||| | |||
Sbjct 1151 ATGACAATGATGGATTCTATGACAAATGATGAACTGGACAGCTCAAACCCAAAGGTGTTT 1210
Query 1297 AACGAGTCAAGGATAATGAGGATAGCGAGAGGGTCAGGGAGGTTAGTAAGAGAAGTGATG 1356
||||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1211 AACGAGTCACGGATGATGCGGATAGCAAGAGGGTCAGGGAGGCAAGTAAGAGAAGTGATG 1270
Query 1357 GAGATGTTGGAAGAGTACAAGAGGAT---AGCAAAGA-------CAA--TGAAAGGGATC 1404
|||||||||||||||||||||||| | |||||||| ||| |||||||| ||
Sbjct 1271 GAGATGTTGGAAGAGTACAAGAGGCTGCTAGCAAAGATATGGAGCAAGATGAAAGGGCTC 1330
Query 1405 AAGATCCCAAAGAACGGAGACATGAG 1430
|||||||||||||| ||||| |||||
Sbjct 1331 AAGATCCCAAAGAATGGAGATATGAG 1356
Score = 189 bits (102), Expect = 6e-47
Identities = 127/139 (91%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1424 ACATGAGCAAGGTCATACCGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGC 1483
|||||||||||||| ||||||| |||||||| || ||||| || |||||| |||||||||
Sbjct 1386 ACATGAGCAAGGTCCTACCGCCGCAGATGCTCAAGCAGATTGGTGGCATGGGCGGTCTGC 1445
Query 1484 AGAGTCTCATGAAGCAGATGGGTT-CGGCTAAGGACATGATGGGAATGTTTGGTGGCGGA 1542
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 1446 AGAGTCTCATGAAGCAGATGGGTTCCGGC-AAGGACATGATGGGAATGTTCGGTGGCGGA 1504
Query 1543 GGCAAGTAGTTTCTATCTT 1561
| |||||||||||| ||||
Sbjct 1505 GACAAGTAGTTTCTTTCTT 1523
> Ahg359800 jgi|Araly1|359800|fgenesh1_pg.C_scaffold_1105000001
Length=621
Score = 137 bits (74), Expect = 2e-31
Identities = 194/251 (77%), Gaps = 12/251 (5%)
Strand=Plus/Plus
Query 751 CCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGAACAAGCT 810
|||| || |||| ||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 4 CCAGCTCGTGTTGTATATGTCATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCT 63
Query 811 GAAGCTTTTAAGGAAACTGT-A-TCTGTTGGAGCTGTAATTATTACTAAGATGGACGGCC 868
|||| || ||| || | | | || || |||| ||| ||||||||||| || |||||
Sbjct 64 CAAGCATTCAAGCAATGTTTCACTC-GT-GGAGTTGTCATTATTACTAATATACACGGCA 121
Query 869 A-TGCCAAGGGAGGTGGTGCTCTTAGCGCTGTTGCAGCTA-CAAAAAGTCCTGTGATATT 926
| | |||| | | |||||||| | | | |||||||||| | |||| |||| |||||||
Sbjct 122 ACT-CCAAAGCATGTGGTGCTATCATCTCTGTTGCAGC-AGCAAAGTGTCCCATGATATT 179
Query 927 CAT-TGGAACAGGAGAGCATATG-GATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTC 984
| || |||||||||| | | | || || ||||||| ||||| | | || | ||||||
Sbjct 180 -AGCTGAAACAGGAGAGAAGA-GAGAGGATTTTGAAGCATTTGAAGCTGAAGCTTTTGTC 237
Query 985 AGCCGTCTCTT 995
|| |||||||
Sbjct 238 AGGAGTCTCTT 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5