BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15320.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920436 jgi|Araly1|920436|scaffold_101717.1 1437 0.0
> Ahg920436 jgi|Araly1|920436|scaffold_101717.1
Length=994
Score = 1437 bits (778), Expect = 0.0
Identities = 927/999 (93%), Gaps = 9/999 (1%)
Strand=Plus/Plus
Query 262 TTTTTGATGATTTTCATAATGGATAGGGATGCATTTTAGGATTTGAGTGTGCAATGAGAT 321
|||||||||| ||||| |||||||| ||||||||| |||| | | | |||||||||
Sbjct 3 TTTTTGATGAATTTCAAAATGGATATTGATGCATTTGAGGA---CA-TTTTCAATGAGAT 58
Query 322 TACAAGAGTTGGTTCTTGTGAAAATCAGCTTAGTTTTCTTATGGTTAATTGGGTTTGTCT 381
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 59 TACAAGAGTTGGTGCTTGTGAAAATCAGCTTA-TTTGCTTATGGTTAATTGGGTTTGTCT 117
Query 382 TCCTGCAACGTAGTGAAGAGAATGGATTTGAAGAACCAAACAATGGGGAAGAACTTTCCT 441
||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 118 TCCTGCAACATAGTGAAGAGAATGGATTTGAAGAACCCAACAACGGGGAAGAACTTTCAT 177
Query 442 GGGATGATCTGGAGAGAGAAGCTGCTAGTAATATATCATCTAAAAGATCTCATGCTGAGA 501
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 178 GGGATGATCTGGAGAGAGAAGCTGCTAGTAATATATCGTCTAAAAGATCTCAGGCTGGGA 237
Query 502 GATCTCACCAACACGAATCTTTTACAAAAGGTGACGAACTTTCTGGAGACTTGTACGAAC 561
|||||||||| || || ||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 238 GATCTCACCAGCAAGAGTCTTTTAGAAAAGGTGATGAACTTTCTGGAGACTTGTATGAAC 297
Query 562 TGTGGAGGCAAGAACAGAACAGCATTGCGGCAAGGCTAGACAAAGAGCTAAAATCCAGGT 621
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 298 TGTGGAGGCAAGAACAGAACAGCATTGCCGCAAGACTAGACAAAGAGCTTAAATCCAGGT 357
Query 622 GGGAACTCGATGAACTGATTGAAGAACAGCTGAGCAGATACCAGTCCCATTACGACAATT 681
||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 358 GGGAACTGGATGAACTGATTGAGGAACAGCTGAGCAGATACCAGTCCCATTACTACAAGT 417
Query 682 CCATGGTTTCAACTTTCTTAAAGGATGTCTCTAACCTCGT-CTTACCCACGTGGATACCA 740
||||||||||||| | |||||| ||||||||||||||| | ||| || |||||| ||||
Sbjct 418 CCATGGTTTCAACGTCCTTAAAAGATGTCTCTAACCTCATCCTT-CCTACGTGGTTACCG 476
Query 741 CCTCATGAGCTAGCTGCTGTGGCCTGGCTTGGAGACTGGCGTCCCACCTCCATTCTTGAC 800
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCTCATGAGCTGGCTGCCGTGGCCTGGCTTGGAGACTGGCGTCCCACCTCCATTCTTGAC 536
Query 801 CTTGTCCGCATTCTGGCAGCTCAAAACCCCTCCTTCTCTCTGTCTGAGTCGAGTTTACGC 860
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 537 CTTGTCCGCATTCTGGCGGCTCAAAACCCCTCCTTCTCTCTGTCTGAGTCGAGTGAACGT 596
Query 861 GTGCTCTCTCAGCTTTTACGTGAGATACGCATCGAAGAGGCCGTTATTGATGAGGAATAT 920
||||||||||||||| | |||||||||||||| || ||||| || || |||||||| |||
Sbjct 597 GTGCTCTCTCAGCTTCTCCGTGAGATACGCATTGAGGAGGCTGTGATCGATGAGGAGTAT 656
Query 921 GCAGAAATTCAGGCCACCGGTGTCTTGTACCTCCCTTTTTCCCCGCTCTGCAATACTCGG 980
|||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||
Sbjct 657 GCAGAAATTCAGGCCACCTGTGTCCTGCACCTTCCTTTTTCCCCGCTCTGCAATACTCGG 716
Query 981 TTGCATGAAGAAGCTCTGCGTTCTGTGCAGGAGCTGTTTGGGAACATACATAAAGTCATC 1040
| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 717 TCGCATGAAGAAGCTCTGCGTTCTGTGCAGGAGCTCTTTGGGAACATCCATAGAGTCATC 776
Query 1041 TCAAAGGCACAACGACTCAGGTATAAAGTGTTGGAGCTGGTGATGAAGAAGCTGCTGAAT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCAAAGGCACAACGACTCAGGTATAAAGTGTTGGAGCTGGTGATGAAGAAGCTGCTGAAT 836
Query 1101 CAAACGGATACAGCCGAGTTTGTGGTCGCATTTGCAGGGATTCAAGACGCCATACACCAG 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 837 CAAACGGATACAGCCGAGTTTGTGGTCGCATTTGCAGGGATTCAAGACGCCATCCACCAG 896
Query 1161 TTTGGAGAGCAGAAGAAGCTAAGAAAG-ATTTACCCAGCAGTTCCTTCACCTCTGAAGGG 1219
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 897 TTTGGAGAGCAGAAGAAGCTAAGAAAGTATT-ACCCAGCAGTTCCTTCACCTCTGAAGGG 955
Query 1220 ATCAGGATCATCTAGTTGAGAGCTTTGTAGAAGCAAAGC 1258
|||||||||||||||||||||||| ||| | ||||||||
Sbjct 956 ATCAGGATCATCTAGTTGAGAGCTATGTTGGAGCAAAGC 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5