BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15330.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312524 jgi|Araly1|312524|fgenesh1_pm.C_scaffold_1001304 1613 0.0
> Ahg312524 jgi|Araly1|312524|fgenesh1_pm.C_scaffold_1001304
Length=1059
Score = 1613 bits (873), Expect = 0.0
Identities = 998/1060 (94%), Gaps = 2/1060 (0%)
Strand=Plus/Plus
Query 23 ATGCAAGAAGAGAAGAGCAAAGAAGATCACAGCCGTCTGATCAATGTCACGGCCAAAGAT 82
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1 ATGCAAGAAGAGAAGAGCAAAGAAGATCACAGCCGCCTGATCAATGTCACGGTCAAAGAT 60
Query 83 CTAACGGTCAGAAACCGACGGCTCGTCGAGGTACCATACACGGCTACACTTTCCCACGCA 142
||||||| |||||||||||||||||| ||||| || ||||| || ||||| || ||||||
Sbjct 61 CTAACGGCCAGAAACCGACGGCTCGTGGAGGTTCCGTACACAGCAACACTCTCTCACGCA 120
Query 143 ATGAACACATTGGTGGCTAACTCCATCTCAGCCCTCCCAGTGGCTGCACCTCCAGGCCAC 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATGAACACATTGGTGGCTAACTCCATCTCAGCCCTCCCAGTGGCTGCACCTCCAGGACAC 180
Query 203 TGGATCGGAGCCGGTGGTTCCATGATCATGGAATCAGACAAACAAACTGGAGTTGTAAGA 262
||||| || ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 TGGATTGGCGCCGGCGGTTCCATGATCATGGAGTCTGACAAACAAACTGGAGTTGTAAGA 240
Query 263 AAACACTATATCGGGATTCTCACGATGCTTGACATACTTGCTCATATCGCCGGTGAAGAT 322
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACACTACATCGGGATTCTCACTATGCTTGACATACTTGCTCATATCGCCGGTGAAGAT 300
Query 323 TCCAATCTCTCTGATCTTGATCGCAAGATGAGTTCACAGGTGTCATCCATCATCGGTCAT 382
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCCAATCTCTCTCATCTTGATCGCAAGATGGGTTCACAGGTGTCATCCATCATCGGTCAT 360
Query 383 TGCCTCGAAGGACTCAGTCTCTGGACACTGAATCCTAATACCAGCGTGTTAGAGTGCATG 442
||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 361 TGCCTTGAAGGACTCAGTCTTTGGACATTGAATCCTAATACCAGCTTGTTAGAGTGCATG 420
Query 443 GAAGTGTTTAGCAAAGGGATCCATCGAGCTTTAGTGCCAGTGGAGAGCAGCATAGAGAGC 502
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAAGTGTTTAGCAAAGGGATCCATCGAGCTTTAGTGCCAGTAGAGAGCAGCATAGAGAGC 480
Query 503 AATAACACTATTGCAGGAGTTGAGTTGATTGAGTCTGCCTCTGCTTACAAGATGCTTACT 562
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 AATAACACCATTGCAGGAGTTGAGTTGATTGAGTCAGCCTCTGCTTACAAGATGCTTACT 540
Query 563 CAGATGGATCTCTTGCGTTTCCTTAAAGACCATCACTTTGATGACCTCAAAACTGTTCTC 622
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 541 CAGATGGATCTCTTGCGGTTCCTCAAAGACCATCACTTTGATGACCTCAAGACTGTCCTC 600
Query 623 TCACGCTCCATCTCTGATCT-CGGAGCTGTTAATGATTCCGTTTACGCCATCACAGAGAG 681
|||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 601 TCACGCTCCATCTCCGATCTTCG-AGCTGTTAATGATTCCGTTTACGCCATCACCGAGAG 659
Query 682 AACCACTGTTTCCAATGCCATCAACGTTATGAAGGGTGCTCTGCTCAACGCTGTCCCCAT 741
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AACAACTGTTTCCAATGCCATCAACGTTATGAAGGGTGCTCTTCTCAACGCTGTCCCCAT 719
Query 742 CGTTCATGCACCTGATATAGCACAAGAGGATCATCTGCAGCTAGTCAATGGGAGACATAG 801
|||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 720 CGTTCACGCACCTGATATAGCACAAGAGGATCATCTACAGCTAATCAATGGGAGGTATAG 779
Query 802 AAAAGTGATAGGTACGTTTTCAGCAACTGATTTGAAAGGATGTCGCCTACCGGAGTTGCA 861
|||||| |||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 780 GAAAGTGGTAGGAACGTTTTCAGCAACGGATTTAAAAGGATGTCGTCTACCGGAGTTGCA 839
Query 862 AACGTGGCTGCCACTCACAGCTCTGGAGTTCACCGAGAAAACTTCGGGGAAGGAGAGGGA 921
||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||
Sbjct 840 GACGTGGCTGCCACTCACAGCTTTGGATTTCACTGAGAAAGCTTCGGGGAAGGAGAGGGA 899
Query 922 GGTGGTGAGTTGCGGTGTGGAGTCGACTATGGAGGAAGCTATAGAGAAAGTGGTGACCAG 981
| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 900 GATGGTGAGTTGCGGTGTGGAGTCAACTATGGAGGAAGCGATTGAGAAAGTGGTGACCAG 959
Query 982 AGGAGTGCACAGAGTATGGGTGATGGATCAACAGGGTCTGCTTCAAGGAGTCGTCTCCCT 1041
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 AGGTGTGCACAGAGTGTGGGTGATGGACCAACAGGGTCTGCTTCAAGGAGTCGTCTCCCT 1019
Query 1042 CACTGATATCATACGCTCCCTAAGATCTACTCTTTCGTAA 1081
||||||||||||||||||||||||| || |||||||||||
Sbjct 1020 CACTGATATCATACGCTCCCTAAGAGCTGCTCTTTCGTAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5