BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15340.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312525 jgi|Araly1|312525|fgenesh1_pm.C_scaffold_1001305 824 0.0
Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105 113 3e-24
Ahg897123 jgi|Araly1|897123|Al_scaffold_0005_1089 113 3e-24
> Ahg312525 jgi|Araly1|312525|fgenesh1_pm.C_scaffold_1001305
Length=1074
Score = 824 bits (446), Expect = 0.0
Identities = 558/610 (91%), Gaps = 15/610 (2%)
Strand=Plus/Plus
Query 776 AGAGGCTGAGAA---GGAGAAGGAGGGTGAAAAGGCTGAGGCTGAGAACAAAGAGGCAGA 832
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 465 AGAGGGTGAGAAGGGGGAGAAGGAGGGTGAAAAGGCCGAGGCTGAGAACAAAGAGGCAGA 524
Query 833 AGTTGTGAGAGACAAGAAAGAGTCCATGGAAGTGGATACCTCTGAGTTGGAGAAGAAGGC 892
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 525 AGTTGTGACTGACAAGAAAGAGTCCATGGAAGTGGATACCTTTGAGTTGGAGAAGAAGAC 584
Query 893 TGGGAGTGGAGAAGGAGCTGAAGAACCTTCCAAAGTTGAAGGCCTCAAGGACACTGAAAT 952
|| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGAGAGTGGAGGAGGAGCTAAAGAACCTTCCAAAGTTGAAGGCCTCAAGGACACTGAAAT 644
Query 953 GAAAGAGGCGCAGGAAGTTGTTACTGAGGCTGATGTAGAGAAGAAGCCTGCAGAGGAAAA 1012
||||||| | ||||| || ||| |||||| ||||| ||||||||||||||| ||||||||
Sbjct 645 GAAAGAGCCTCAGGATGTAGTTGCTGAGGGTGATGGAGAGAAGAAGCCTGCGGAGGAAAA 704
Query 1013 GACTGAGAACAAGGGCAGCGTGACAACCGAAGCTAACGGAGAACAGAATGTAACCCTGGG 1072
||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| ||
Sbjct 705 GACTGAGAACAAGGGCAGCGTGACAACAGAGGCTAACGGAGAACCGAATGTGACCCCGGA 764
Query 1073 TGAGCCTAACCTTGATGCAGATGCTGAAGCAGATAAGGGAAAAGAATCCAAAGAATATGA 1132
||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 765 TGAACCTAATCTTGATGCAGATGCTCAAGCAAATAAGGGAAAAGAATCCAAAGAATATGA 824
Query 1133 TGAGAAGACGACAGAAGCTGAGGCGAATAAGGAAAATGACACTCAAGAATCTGATGAGAA 1192
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 825 TGAGAAGAAGAGTGAAGCTGAGGCAAATAAGGAAAATGACACTCAAGAATCTGATGAGAA 884
Query 1193 GAAGACAGAAGCTGCAGCAAATAAGGAGAACGAAACCCAAGAGTCTGATGTCAAGAAGAC 1252
||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 885 GAAGACAGAAGCTGCAGCAAATAAGGAGAACGAAACCGAAGAATCTGATGTTAAGAAGAC 944
Query 1253 CGAAGCTGCAG--------T-AG---CAGAGGAGAAGAGTAACGACATGAAGGCAGAAGA 1300
|||||||||| | || |||||||||||||||||||| |||||||||||||
Sbjct 945 AGAAGCTGCAGCAGCAACATCAGTAGCAGAGGAGAAGAGTAACGACTTGAAGGCAGAAGA 1004
Query 1301 CACAAACAGAAGCTTGGAGGCGAATCAAGTTCAACAGCAGCAGGGAGCTGCAGCTTCCGT 1360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1005 CACAAACAGAAGCTTGGAGGCGAATCAAGTTCAACAGCAGCAGGGCGCTGCAGCTTCCGT 1064
Query 1361 GAGCTGTTAA 1370
||||||||||
Sbjct 1065 GAGCTGTTAA 1074
Score = 715 bits (387), Expect = 0.0
Identities = 457/489 (93%), Gaps = 12/489 (2%)
Strand=Plus/Plus
Query 216 ATGGAAAACACAGACGAGCTTGTCTCCATTGAGCTACCAGCTCCAGCTTCATGGAAGAAA 275
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAAAACACAGACGAACTTGTCTCCATTGAGCTACCAGCTCCTGCTTCATGGAAGAAA 60
Query 276 CTGTTTTATCCGAAAAGAGCCGGTACTCCGAGAAAGACGGAGATTGTGTTTGTGGCTCCA 335
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTGTTTTATCCGAAAAGAGCGGGTACTCCGAGAAAGACAGAGATTGTGTTTGTGGCTCCA 120
Query 336 ACGGGTGAAGAGATTAGCTCGCGGAAGCAGTTGGAGCAGTACCTGAAGGCCCATCCTGGC 395
|||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 121 ACGGGTGAAGAGATCAGCTCACGGAAGCAGTTGGAACAGTACCTCAAGGCCCATCCTGGC 180
Query 396 AATCCTGTCATCTCTGAGTTTGAGTGGACAACTGGGGAAACTCCAAGGAGGTCTTCAAGG 455
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCCTCTCATCTCTGAGTTTGAGTGGACAACTGGGGAAACTCCAAGGAGGTCTTCAAGG 240
Query 456 ATCAGCCAAAAGGTTAAGGCTACAACGCCTACTCCTGACAAAGAGCCCCTCCTGAAGAAG 515
|| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ATTAGCCAAAAGGTGAAGGCCACAACGCCTACTCCTGACAAAGAACCCCTCCTGAAGAAG 300
Query 516 AGACGATCTTCTCTCACGAAGAAGGACAATAAGGAGGCTGCTGAGAAAAATGAAGAGGCT 575
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGACGATCTTCTCTTACGAAGAAGGACAATAAGGAGGCTGCTGAGAAAAATGACGAGGCT 360
Query 576 GCTGTGAAGGAGAACATGGATGTTGATAAGGATGGGAAGACGGAAAACGCagaggctgag 635
||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 361 GCTATGAAGGAGAACATGGATGTTGACAAGGATGGAAAGACGGAAAACGCAGAG----A- 415
Query 636 aaggagaaagagaaggagggagtgacagaaattgcagaggcggagaaggagaaCAACGAG 695
| |||||| | || || | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 416 A-GGAGAA-G-GA-GG-G--AGTGACAGAAATTGCAGAGGCAGAGAAGGAGAACAAAGAG 468
Query 696 GGTGAGAAG 704
|||||||||
Sbjct 469 GGTGAGAAG 477
> Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105
Length=753
Score = 113 bits (61), Expect = 3e-24
Identities = 87/99 (88%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 821 CAAAGAGG--CAGAAGTTGTGA-GAGACAAGAAAGAGTCCATGGAAGTGGATACCTCTGA 877
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 507 CAAAGAGGATGAGAAGTTGTGACG-GACAAGAAAGAGTCCATGGAAGTGGATACCTCTGA 449
Query 878 GTTGGAGAAGAAGGCTGGGAGTGGAGAAGGAGCTGAAGA 916
||||||||||||| ||| || || | ||||| ||||||
Sbjct 448 GTTGGAGAAGAAGACTGAGATTGTTGGAGGAGTTGAAGA 410
> Ahg897123 jgi|Araly1|897123|Al_scaffold_0005_1089
Length=549
Score = 113 bits (61), Expect = 3e-24
Identities = 87/99 (88%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 821 CAAAGAGG--CAGAAGTTGTGA-GAGACAAGAAAGAGTCCATGGAAGTGGATACCTCTGA 877
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 475 CAAAGAGGATGAGAAGTTGTGACG-GACAAGAAAGAGTCCATGGAAGTGGATACCTCTGA 417
Query 878 GTTGGAGAAGAAGGCTGGGAGTGGAGAAGGAGCTGAAGA 916
||||||||||||| ||| || || | ||||| ||||||
Sbjct 416 GTTGGAGAAGAAGACTGAGATTGTTGGAGGAGTTGAAGA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5