BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15350.2
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471732 jgi|Araly1|471732|fgenesh2_kg.1__1686__AT1G15350.3 1199 0.0
> Ahg471732 jgi|Araly1|471732|fgenesh2_kg.1__1686__AT1G15350.3
Length=882
Score = 1199 bits (649), Expect = 0.0
Identities = 829/909 (91%), Gaps = 40/909 (4%)
Strand=Plus/Plus
Query 9 AAGGCAAATCATTTCAAAGCGAAAGG-AAAAGGAGAAACGTAAAGAGGGCAAAGCCCTTC 67
|||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct 1 AAGGCAAATCATTTCAAAGCGAAAGGCAAAGGGA-AAACGTAAAGAGGGCAGAGCCCTTC 59
Query 68 TTCTTCTTGTTCGAGAAGGAGCTGCAGCCTCAGATAAGGATTCTTTTGATGCCCAGTTGA 127
|||||||| | |||| | || | || || | ||| |||||||||||||
Sbjct 60 TTCTTCTTCTCCGAG-A--AG--G-AG-CT----T-----TTC----GATGCCCAGTTGA 99
Query 128 TAAAGGAAGCGACTTTATTTTAACCAACGAGATTTTATCATCAGGATCATTGATCACCCT 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 100 TAAAGGAAGCGACTTTATTTTAACCAACGAGATTTTATCACCAGGATCATTGATCACCCT 159
Query 188 CTTGAGAACATCTCGAGCTTTCCCAGATCTATCTGAGCTCCTGGGTTTATAAATCGCTTC 247
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 160 CTTGAGAACATCTCGAGCTTTCCCAGATCTATCGGAGCTCCTGGGTTTATAAATCGCTGA 219
Query 248 CTTCACATATCGAT--G-G--GTGGCTGCGTGGGTTGCTACAGAGAACACAGATCAACTG 302
||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 220 CTTCACAAATCGATGGGAGCAGTGGCTGCGTGGGTTGCTACAGAGAACACAGATCAACTG 279
Query 303 CCGCCAGTCTGAAGGATCCACCTTCCAATTCCATTGCTCGACCGTGTAAGAAACCGAGTG 362
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 280 CCACCACTCTGAAGGATCCACCCTCCAATTCCATTGCTCGACCGTGTAAGAAACCGAGTG 339
Query 363 TCTCTGAAGATTTCTGGTCAACAAGCACAGTTGATATGGACAACATCACCTTCCCTTCAC 422
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 340 TCTCCGAAGATTTTTGGTCAACAAGCACTGTTGATATGGACAACATCACCTTCCCTTCAC 399
Query 423 AGGGGAGCTTATCATCATCCAATCAGACTTTTGATTCTCAATCTGCTGCTAGAAACTCTA 482
|||||||| | | ||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 400 AGGGGAGC-T-T-ATCATCCAACCAGACTTTTGATTCTCAGTCTGGTGCTAGAAACTCTA 456
Query 483 ATGCTCCTCCTGAATATGTAAATCAAGGTCTTCTTCTTTGGAATCAGACACGGGAGCGTT 542
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATGCTCCTCCTGAGTTTGTTAATCAAGGTCTTCTTCTTTGGAATCAGACACGGGAGCGTT 516
Query 543 GGGTGGGAAAGGATAAACCCAACAACCCGGTGGATCACAATCAAGGAGCCAAGTTAAATT 602
|||| || ||||| |||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 517 GGGTAGGCAAGGAAAAACCCAACAACCCGGCGGATCGCAATCATGGAGCCAAGTTAAATT 576
Query 603 GGAACACAGCAACGTATGATAGCTTGCTGGGGAGCAACAAGTTATTTCCCCAACCCATTC 662
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 577 GGAACACAGCAACGTATGATAGCTTGCTTGGGAGCAACAAGTTATTTCCCCAACCCATTC 636
Query 663 CTCTCACCGAAATGGTGGATTTTCTAGTGGACATTTGGGAACAAGAAGGTCTATATGACT 722
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 637 CTCTCACCGAAATGGTGGATTTTCTAGTGGACATATGGGAACAAGAAGGTCTATATGACT 696
Query 723 GA--A--CAAGACTTGGAAGACACACACACATACTGGTTCGGGCAtttctgatttatttt 778
|| | |||||||||||||| ||||| ||| |||||| |||||||||| ||||| ||||
Sbjct 697 GATGAAACAAGACTTGGAAGATACACATACACACTGGTGCGGGCATTTCCGATTT-TTTT 755
Query 779 ttcttttcggttttcttttcttttctCAAAGCCCTTGTTGTT---ACCACTTATCATCTT 835
|||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||
Sbjct 756 --CTTTTCGGTTTTGTTTTCGTTTCTAAAAGCCCTTGTTGTTGTTACCACTTACCATCTT 813
Query 836 CCATTTGGAGTTGATCGAGAATACTGGGAAATGTGGCTTATACGTTTTCACCGTAAATGA 895
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 814 TCATTTGGAGTTGATCGAGAATACTGGGAAATGTGGCTCATACGTTTTCACCGTAAATGA 873
Query 896 GAAATATCC 904
|||||||||
Sbjct 874 GAAATATCC 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5