BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15360.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1 1245 0.0
> Ahg471733 jgi|Araly1|471733|fgenesh2_kg.1__1687__AT1G15360.1
Length=830
Score = 1245 bits (674), Expect = 0.0
Identities = 790/843 (94%), Gaps = 20/843 (2%)
Strand=Plus/Plus
Query 1 TCCATCTTACATATATTACTCATCATCAAGTTCCTACTTTCTCTCTGACAAACATCACAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 TCCATCTTACATATATTACTCATCATCAAGTTCCTACTTTCTCTCTGACAAAAAACACAG 60
Query 61 AGTAAGTAAGAATGGTACAGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTAAGTAAGAATGGTACAGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTT 120
Query 121 CTTGGGTCGCTGAGATTCGTCATCCTCTCTTGAAACGGAGGATTTGGCTAGGGACGTTCG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CTTGGGTCGCTGAGATTCGTCATCCTCTCTTGAAGCGGAGGATTTGGCTAGGGACGTTCG 180
Query 181 AGACCGCAGAGGAGGCAGCAAGAGCATACGACGAGGCCGCCGTTTTAATGAGCGGCCGCA 240
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 181 AGACCGCTGAGGAGGCAGCAAGAGCTTACGATGAGGCCGCCGTTTTAATGAGCGGCCGCA 240
Query 241 ACGCCAAAACCAACTTTCCCCTCAACAACAACAACACCGGAGAAACTTCCGAGGGCAAAA 300
||||||| |||||||||||| |||||||||||| | | ||||| || |||||||||||||
Sbjct 241 ACGCCAAGACCAACTTTCCCTTCAACAACAACA-C-C-GGAGACACATCCGAGGGCAAAA 297
Query 301 CCGATATTTCAGCTTCGTCCACAATGTCATCCTCAACATCATCTTCATCGCTCTCTTCCA 360
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 298 CCGATATTTCATCTTCGTCCACAATATCATCCTCA---TCATCTTCATCGCTCTCTTCCA 354
Query 361 TCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCCCCATCCCTCACCTGCCTCC 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 TCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCTCCATCCCTCACCTGCCTCC 414
Query 421 GTCTTGACACAGCCAGCTCCCATATCGGCGTCTGGCAGAAACGGGCCGGTTCAAAGTCTG 480
|||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 415 GTCTCGACACGGCCAGCTCCCACATCGGCGTCTGGCAGAAACGCGCCGGTTCCAAGTCTG 474
Query 481 ACTCCAGCTGGGTCATGACGGTGGAGCTAGGTCCCGCAAGCTCCTCCCAAGAGACTACTA 540
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 475 ACTCCAGCTGGGTCATGACGGTGGAGCTCGGTGCCGCCAGCTCCTCCCAAGAGACTACTA 534
Query 541 GTAAAGCTTCACAAGACGCTATTCTTGCTCCGACCACTGAAGTTGAAATTGGTGGCAGCA 600
|||||| ||||||||||| || |||||||||||||||||| |||| |||||||||| |
Sbjct 535 GTAAAGATTCACAAGACG--AT-CTTGCTCCGACCACTGAACTTGAGGTTGGTGGCAG-A 590
Query 601 G-AGAAGAAGT-ATTGGATGAGGAAGAAAAGGTTGCTTTGCAAATGATAGAGGAGCTTCT 658
| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 GGAGAAGAAGGGAT-GGATGAGGAAGAGAAGGTTGCTTTGCAAATGATAGAGGAGCTTCT 649
Query 659 CAATACAAACTAAATCTTATTTGCTTATATATATGTACCTATTTTCATTGCTGATTTACA 718
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 650 CAATACAAACTAAACCTTATTTGCTTATATATATGTACCTATTTTTATTGCTGATTTACA 709
Query 719 GCCAAAATAATCAATTATACCGTGTATTTTATAG-AT-GTTTT-ATATT-AAAAGGTTGT 774
|||| ||||||||||||||| || |||||||| | || ||||| ||||| ||||||| ||
Sbjct 710 GCCATAATAATCAATTATACTGTCTATTTTAT-GCATCGTTTTTATATTTAAAAGGT-GT 767
Query 775 TAGCTATATATTGTTTCTCTT-TTTCCACATTTGTATCTAATAAAGTATTGGTGTTTGTA 833
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 768 TAGCTATATATTGTTTCTCTTATTTCCACATTTGTATCTAATAAAGTATTGATGTTTGTA 827
Query 834 ACT 836
|||
Sbjct 828 ACT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5