BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15370.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471734 jgi|Araly1|471734|fgenesh2_kg.1__1688__AT1G15370.1 1094 0.0
> Ahg471734 jgi|Araly1|471734|fgenesh2_kg.1__1688__AT1G15370.1
Length=712
Score = 1094 bits (592), Expect = 0.0
Identities = 652/680 (96%), Gaps = 7/680 (1%)
Strand=Plus/Plus
Query 60 AAGGAAGGAAGAAACTT--GAGAGGAAGATCATGATCCTAGCTGTGTTGTTCGCCAATTC 117
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 35 AAGGAAGGAAGAAACTTGAGAGAGGAAGATCATGATCCTAGCCGTGTTGTTCGCCAATTC 94
Query 118 CGTTGGGAATGTTTTAATCGAAAGGTTCAATGGAGTACCAGCTGAGGAACGGCTCCACTG 177
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CGTTGGGAATGTTTTGATCGAAAGGTTCAATGGAGTACCAGCTGAGGAACGGCTCCACTG 154
Query 178 GCGATCTTTCTTGGTTAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCT 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GCGATCTTTCTTGGTCAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCT 214
Query 238 TCTCGTTGCTTGCCACAAGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCTCGTTGCTTGCCACAAGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCAT 274
Query 298 CTTCCTTGTTGGCAAAGACGAGTATGATGAACTTGCTTTGGCAGAAACCATCTATATCAT 357
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 275 CTTCCTTGTTGGCAAAGACGAGTACGATGAGCTTGCTTTGGCAGAAACCATATATATCAT 334
Query 358 AACAGCGGCTGTGAAAGACGTATGTGGAAAGCCGCCTACAGAGCGAGTGTTTTTGGATAA 417
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 335 AACAGCGGCTGTGAAAGACGTATGTGGAAAGCCGCCAACAGAGCGAGTGTTTTTGGATAA 394
Query 418 ATATGGAAGGATTTGCTTGTGCCTTGATGAAATCGTTTGGAACGGACTTCTGGAGAACAC 477
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 395 ATATGGACGGATTTGCTTGTGTCTTGATGAAATCGTTTGGAACGGACTTCTGGAGAACAC 454
Query 478 CGACAAAGACAGGATCAAGCGACTCATCAGATTGAAACCTCCTTCTGAAGTTTGATATGC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 CGACAAAGACAGGATCAAGCGACTCATCAGATTGAAACCTCCTTCTGAAGTTTGATTTGC 514
Query 538 TCCAACCA-ACCACACATTCTTCTTCTACTCATTTTAAGAGCTTTCTCATTCTCCACCGA 596
|||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 515 TCCAACCACACCACACATTCTTCTTTTACTCATTTTAAGACCTTTCTCATTCTCCACCGA 574
Query 597 TTGTTGTTTGTTGAATCACTTCTCTATATCACATATTCAACTATCAACTACTGCTGTTGT 656
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 575 TTGTTGTTTGTTGAATCACTTCTCTCTATCAAATATTCAACTATCAACTACTGCTGTTGT 634
Query 657 TCGATCAGTCCATCTTGTAGTGTTGTTTTTTAAATC-TTCAGTTTT-TAGTGTTACATAA 714
||||||||||||| ||||||||| ||||||| ||| |||| |||| |||||| ||||||
Sbjct 635 TCGATCAGTCCATTTTGTAGTGT-GTTTTTTTTATCCTTCA-TTTTGTAGTGTCACATAA 692
Query 715 CAAAGAACAAATTTCTATCC 734
|||||| ||||| ||||||
Sbjct 693 TAAAGAAAAAATTCCTATCC 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5