BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15380.1
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920442 jgi|Araly1|920442|scaffold_101723.1 891 0.0
> Ahg920442 jgi|Araly1|920442|scaffold_101723.1
Length=565
Score = 891 bits (482), Expect = 0.0
Identities = 524/545 (96%), Gaps = 0/545 (0%)
Strand=Plus/Plus
Query 191 AGGATCTTTGTCTCTGGAAAATGAAGGAAGACGCAGGAAACCCTTTGCATCTCACGTCAC 250
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1 AGGATCTTTGTCTCTGGAAAATGAAGGAAAACGCAGGTAACCCTTTGCATCTCACGTCAC 60
Query 251 TGAACCATGTCTCTGTCTTGTGCCGATCCGTCGACGAATCTATGAATTTTTACCAAAAGG 310
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 61 TGAACCATGTCTCTGTCTTGTGCCGTTCCGTCGACGAATCTATGAACTTTTACCAAAAGG 120
Query 311 TGTTAGGGTTCATCCCGATACGAAGACCTGAATCCTTAAATTTTGAAGGCGCTTGGTTGT 370
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TGTTAGGGTTCATCCCGATTCGAAGACCTGAATCCTTGAATTTTGAAGGCGCTTGGTTGT 180
Query 371 TTGGTCACGGGATTGGAATACACCTCCTGTGTGCCCCAGAACCAGAGAAACTTCCCAAGA 430
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 181 TTGGTCATGGGATTGGAATACACCTACTCTGTGCCCCAGAACCAGAGAAACTTCCCAAGA 240
Query 431 AAACTGCGATTAATCCCAAGGATAATCACATCTCTTTCCAGTGTGAGAGTATGGGAGTAG 490
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACTGCGATCAATCCCAAGGATAATCACATCTCTTTCCAGTGTGAGAGTATGGGAGTAG 300
Query 491 TGGAGAAGAAGCTGGAGGAAATGGGGATAGATTATGTAAGGGCATTAGTAGAAGAAGGAG 550
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TGGAGAAGCAGCTGGAGGAAATGGGGATAGAGTATGTAAGGGCATTAGTAGAAGAAGGAG 360
Query 551 GGATCCAAGTGGACCAGCTCTTCTTCCATGACCCTGATGGCTTCATGATCGAGATTTGCA 610
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 361 GGATCCAAGTGGACCAGCTCTTCTTCCACGACCCTGATGGCTTCATGATCGAGATCTGCA 420
Query 611 ACTGCGATAGCCTCCCCGTAGTCCCCCTCGTAGGAGAAATGGCTCGGTCCTGCTCAAGAG 670
|||| || ||||||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 421 ACTGTGACAGCCTCCCCGTTGTCCCCCTCGTAGGAGGAATGGCTCGGTCTTGCTCAAGAG 480
Query 671 TCAAACTCCACCAGATGGTGCAGCCACAACCGCAGACTCAGATCCACCAAGTGGTCTACC 730
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAAACTCCACCAAATGGTGCAGCCACAACCGCAGACTCAGATCCACCAAGTGGTCTACC 540
Query 731 CTTAA 735
| |||
Sbjct 541 CCTAA 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36521754486
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5