BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15385.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920443 jgi|Araly1|920443|scaffold_101724.1 311 3e-84
> Ahg920443 jgi|Araly1|920443|scaffold_101724.1
Length=275
Score = 311 bits (168), Expect = 3e-84
Identities = 218/241 (90%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 72 AACAACAACAAGAACATGAAGATGATGATGAGTTCCGCAAAAGAAAGTGGTAATGGTACC 131
||||||||||| |||| | | | ||||||||||||||||||||| ||| |||||||||||
Sbjct 40 AACAACAACAAAAACACG-A-A-GATGATGAGTTCCGCAAAAGAGAGTCGTAATGGTACC 96
Query 132 ACTAA-TATTGTTATTAAAGAGACGATGAATAAGAAGGTGGAAAGGAAGGCATCGATGGA 190
||||| ||| |||| | ||| |||| ||||||||||||||| ||||||||||| |||||
Sbjct 97 ACTAACAATT-TTATCACAGAAACGAGGAATAAGAAGGTGGAGAGGAAGGCATCTATGGA 155
Query 191 CGTGGACAAGA-GCGCAGAAGCTTTCATCACAAAGTTCAGAAATCAGCTTCTTCTCCAGC 249
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CGTGGACAA-ATGCGCAGAAGCTTTCATCACAAAGTTCAGAAATCAGCTTCTTCTCCAGC 214
Query 250 GTCTTGAATCCATTGAAAACATGCTCTCCAAAGGCCCTTAACACTACTTATCAATATACA 309
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 215 GTCTCGAATCCATCGAAAACATGCTCTCCCGAGGCCCTTAACACTACTTATCAATACACA 274
Query 310 C 310
|
Sbjct 275 C 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5