BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15390.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334826 jgi|Araly1|334826|fgenesh1_pg.C_scaffold_1001391 1360 0.0
> Ahg334826 jgi|Araly1|334826|fgenesh1_pg.C_scaffold_1001391
Length=813
Score = 1360 bits (736), Expect = 0.0
Identities = 788/813 (97%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 25 ATGGGACTCCACCGAGACGAAGCGACGGCCATGGAAACCCTTTTCAGAGTCTCACTTCGT 84
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGACTCCACAGAGACCAAGCGACGGCCATGGGAACCCTTTTCAGAGTCTCACTTCGT 60
Query 85 CTACTTCCGGTTTCCGCCGCCGTGACATGTCGCTCGATCCGATTCCCCGTTTCAAGACCC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTACTTCCGGTTTCCGCCGCCGTGACATGTCGCTCGATCCGATTCCCCGTTTCGAGACCC 120
Query 145 GGTTCCTCACACTTACTGAACCGTAAGCTGTATAATTTGCCTACTTCTTCTT-C-C-TCC 201
|||||||||||||| |||||||||| ||||||||||||||| ||||||||| | | |||
Sbjct 121 GGTTCCTCACACTTGTTGAACCGTAAACTGTATAATTTGCCTTCTTCTTCTTCCTCATCC 180
Query 202 TCTTTGTCGACAAAAGCCGGTTGGTTATTGGGTCTTGGTGAGAAGAAAAAGAAAGTGGAT 261
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 TCTTTGTCGACAAAAGCCGGTTGGTTATTGGGTCTGGGGGAGAAGAAAAAGAAAGTGGAT 240
Query 262 TTACCGGAGATAGTGGCATCTGGTGACCCGGTTCTGCACGAGAAGGCCCGAGAAGTTGAC 321
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TTACCGGAGATAGTGGCAGCTGGTGACCCGGTTCTGCACGAGAAGGCCCGAGAGGTTGAC 300
Query 322 CCGGGAGAAATCGGGTCGGAGCGTATTCAGAAGATAATTGATGATATGATTAAAGTTATG 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CCGGGAGAAATCGGGTCGGAGCGTATTCAGAAGATAATTGATGATATGATTAAAGTGATG 360
Query 382 AGATTGGCTCCTGGAGTTGGCCTCGCTGCTCCTCAAATTGGTGTTCCCTTAAGGATTATT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGATTGGCTCCTGGAGTTGGCCTCGCTGCTCCTCAAATTGGTGTTCCCTTAAGGATTATT 420
Query 442 GTATTGGAAGATACAAAAGAGTATATAAGTTACGCACCAAAGGAAGAGATTCTTGCTCAA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTATTGGAAGATACAAAAGAGTATATAAGTTACGCACCAAAGGAAGAGATTCTTGCTCAA 480
Query 502 GAAAGACGTCATTTTGATCTCATGGTGATGGTGAATCCGGTTCTCAAGGAGAGAAGCAAC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAAGACGTCATTTTGATCTCATGGTGATGGTGAATCCGGTTCTCAAGGAGAGAAGCAAC 540
Query 562 AAGAAAGCTCTTTTCTTTGAAGGATGCTTGAGTGTTGATGGATTCAGAGCTGCGGTGGAG 621
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AAGAAAGCTCTCTTCTTTGAAGGATGTTTGAGTGTTGATGGATTCAGAGCTGCGGTGGAG 600
Query 622 AGATACCTTGAGGTGGTAGTGACGGGCTACGATCGTCAAGGAAAGAGGATTGAAGTGAAT 681
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 601 AGATACCTTGAGGTGGTAGTAACAGGCTACGATCGTCAAGGAAAGAGGATTGAAGTGAAT 660
Query 682 GCTTCAGGTTGGCAAGCTAGGATTTTGCAACATGAGTGTGATCATTTGGATGGTAATCTT 741
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GCTTCAGGTTGGCAAGCGAGGATTTTGCAACATGAGTGTGATCATTTGGATGGCAATCTT 720
Query 742 TACGTTGATAAGATGGTACCACGCACTTTTAGGACAGTCGACAACTTGGACTTGCCTTTA 801
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TATGTTGATAAGATGGTACCACGCACTTTTAGGACAGTCGACAACTTGGACTTGCCTCTA 780
Query 802 GCTGAGGGCTGCCCTAAGCTCGGACCTCAATGA 834
||||||||||| |||||||||||||||||||||
Sbjct 781 GCTGAGGGCTGTCCTAAGCTCGGACCTCAATGA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5