BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15400.3

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471740 jgi|Araly1|471740|fgenesh2_kg.1__1694__AT1G15400.2         628    1e-179


> Ahg471740 jgi|Araly1|471740|fgenesh2_kg.1__1694__AT1G15400.2
Length=683

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 401/429 (93%), Gaps = 9/429 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGGTCTTCAAAGATCAACAATCTCTTTCCGCCGTCAGGGATCTTCCGGTATAGTG  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  89   ATGGAGGGTCTTCAAAGATCAACAATCTCTTTCCGCCGTCAAGGATCTTCCGGTATAGTC  148

Query  61   TTTGACGATCGTCTCATCGCCGAACTCAACAAATCGGGAAACAACGAGCAGAAAGACGAA  120
            ||||||||||| |||||||| || || |||||| |||||  |||||||||||||||||| 
Sbjct  149  TTTGACGATCGCCTCATCGCTGAGCTTAACAAAACGGGAGGCAACGAGCAGAAAGACGAC  208

Query  121  AGTCAACGCGACGAACAACCTAAGCCTATGTCGGAAAGCTCTGAACAGGTCAAACCAAT-  179
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| 
Sbjct  209  AGTCAACGCGACGAACAACCTAAGCCTTTGTCGGAAAGCTCAGAACAGGTCAAACCAATC  268

Query  180  --------CGATGAGAAAGACAAGCTTAGACCGATTAAAACCGGTGGAGGAGCACCAGGA  231
                    |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  269  GCCGGCGGCGATGAGAAAGACAAGCTCAGACCGATTAAAACCGGTGGAGGAGCACCAGGA  328

Query  232  GGAATAGAGAGGAGTCGATCTAACGGTGGAGGAGCTCAACGACATCATAGAACAACCGGA  291
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  329  GGAATAGAGAGGAGTCGATCTAACGGCGGAGGAGCTCAACGACATCATAGAACAACTGGA  388

Query  292  AGAGTTTCTCCGGCAGTGGACCCGCCGTCTCCGAGAATTTCGTCATGCGGTTGTTGCTCT  351
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  389  AGAGTGTCTCCGGCAGTGGACCCGCCGTCTCCGAGAATTTCGTCATGCGGTTGCTGCTCT  448

Query  352  GCGTTTGGAAAGAATCCGCCGGGGAAGAAAGTTAATCCGAGGAAAAGGCCGCCGAAACGT  411
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  449  GCGTTTGGAAAGAATCCGCCGGGGAAGAAGGTTAATGCGAGGAAAAGGCCGCCGAAACGT  508

Query  412  AGATCGAGG  420
            |||||||||
Sbjct  509  AGATCGAGG  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25466108556


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5