BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15415.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312533 jgi|Araly1|312533|fgenesh1_pm.C_scaffold_1001313           483    7e-136
  Ahg471741 jgi|Araly1|471741|fgenesh2_kg.1__1695__AT1G15410.1         226    1e-58 


> Ahg312533 jgi|Araly1|312533|fgenesh1_pm.C_scaffold_1001313
Length=291

 Score =  483 bits (261),  Expect = 7e-136
 Identities = 281/291 (97%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGCGGACAGGATGAGGAATTCAGTGTGAGGGCCGGCCAAATCGTGGGCCAAGCT  60
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAGCGGACAGAATGAGGAGTTCAGTGTGAGGGCCGGCCAAATCGTGGGCCAAGCT  60

Query  61   CATGTGAAGGAGAATGATTGCAACAACTCTTCTCAAGCTTCAGGTTTTCTCCAGCAGAAA  120
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  61   CATGTGAAGGAGAATGATTGCAACCACTCTTCTCAAGCTTCAGGTTTTCTCCAGCAGAAA  120

Query  121  GGGGAGAAAGTGAAGAGTATGGCACATGATGCATCAGAGGCAGTGAAGAACAAATTGGGG  180
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GGGGAGAAAGTGAAGAGCATGGCACATGAAGCATCAGAGGCAGTGAAGAACAAATTGGGG  180

Query  181  ATCAACAATGACAACAATGAAGAATATAAGAACAAAAACCCTTTGGACAAGAAGAACCCT  240
            ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct  181  ATCAACAGTGACAACAATCAAGAATATAAGAACAAGAACCCTTTGGACAAGAAGAATCCT  240

Query  241  AACAACACAACCAGTCCAAGCATGCCTGGTCATCCTCCTTCAGATATCTAA  291
            ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  AACAACACAACCAGTCCAAGCATGCCTGGTCATCCTCCTTCCGATATCTAA  291


> Ahg471741 jgi|Araly1|471741|fgenesh2_kg.1__1695__AT1G15410.1
Length=2248

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 156/172 (91%), Gaps = 4/172 (2%)
 Strand=Plus/Minus

Query  309   TCTTTTTATTCCACTAATAATTGTCTGTATTAATAATAAGGGATATTACACATTGCATCC  368
             |||||||||||||||||||| ||||||   ||| ||||||||||||||||||||||||||
Sbjct  2248  TCTTTTTATTCCACTAATAAATGTCTG---TAACAATAAGGGATATTACACATTGCATCC  2192

Query  369   AAGCCAACACATGTTCAGACTTTTTTG-GCTTTGGAGATGTTCACACTTGTTTTGACCAA  427
             |||||||| |||||||| ||||||||  ||||| || |||||||||||||| ||||||||
Sbjct  2191  AAGCCAACTCATGTTCAAACTTTTTTTTGCTTTAGACATGTTCACACTTGTGTTGACCAA  2132

Query  428   TACATGTTGAGACTTTGGTTTTGAGTTTTCTATCAAACACTGGTTTACACTT  479
              ||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct  2131  CACATGTTGAGACTTTGGTTTTGATTTTTCTATCAAACGCCGGTTTACACTT  2080



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5