BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15420.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471743 jgi|Araly1|471743|fgenesh2_kg.1__1697__AT1G15420.1 1650 0.0
> Ahg471743 jgi|Araly1|471743|fgenesh2_kg.1__1697__AT1G15420.1
Length=1083
Score = 1650 bits (893), Expect = 0.0
Identities = 1021/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 15 TAGAAGAAGAAGAACCCTAACTAAACCCAACGCCGGCctctctttctctctctc-c-ccg 72
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 1 TAGAAGAAGAAGAACCCTAACTAAACCCAACGTCGGCCTCTCTTTCTCTCTCTCTCTCCG 60
Query 73 cttctctcGTCGATCGCTGACCATGGCCAAGGACAAACTCAAGCCTCTTCTCTCCTCTGA 132
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTCTCGCCGATCGCCGACCATGGCCAAGGACAAACTCAAGCCTCTTCTCTCCTCTGA 120
Query 133 TGCTGCAGGTGATATCGCTGATACTCCTCTCCGAGAGAAGAAGCATAAGAAGAAGAGCAA 192
||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 TGCTGCAGGCGAAATCGCTGATACTCCTCCCCGAGAGAAGAAGCATAAGAAGAAGAACAA 180
Query 193 GAAGCGAGCTGAACCTGAACCTGATATACCCTCTACACGAGATTCCGGTCTTGATGAAGA 252
||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||
Sbjct 181 GAAGCGAGCTGAACCTGAACCCGATATACCCTCTACGCGTGATTTCGGTCTTGATGAAGA 240
Query 253 TAGAGATGGAGTATTGGTAGATGATACTCTAAATGAGCCAACGATAGGTGATAAACTTGA 312
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TAGAGATGGAGTGTTGGTAGATGATACTCTTAATGAGCCAACGATAGGTGATAAACTTGA 300
Query 313 GAGTCTTGACTTATTAAATGGCGAAAAGGTTAACAGTGAGGAGAGTAATAGAGATTCTGC 372
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 301 GAGTCTTGACTTATTAAATGGCGAAAAGGTTATCAGTGAGGAGAGTAATAGAGCTTCTGC 360
Query 373 TCCTGGCGATGATAAGCCTCCTACTGCTGCTTCTGTTAACGTTCTTCTGAGACAAGCATT 432
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 361 TCCGGGCGATGATAAGCCTCCTACTGCAGCCTCTGTTAACGTTCTTCTGAGACAAGCATT 420
Query 433 GCATGCCGATGATCGTTCTCTTCTACTCGACTGCTTGTACAACCGAGATGAGCAGGTGAT 492
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GCATGCTGACGATCGATCTCTTCTACTTGACTGCTTGTACAACCGAGATGAGCAGGTGAT 480
Query 493 TGCTAATTCGGTTGCTAAGTTGAATTCAGCCGAAGTACTCAAGCTTCTAAATGCCCTTCT 552
||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 TGCTAATTCCGTCGCCAAGTTGAATTCAGCAGAAGTACTCAAGCTTCTAAATGCCCTTCT 540
Query 553 ACCAATACTACAATCAAGGGGTGCTATTTTGGCTTGTACAATTCCATGGATAAAGAGTCT 612
||||||||||||||||||||| || |||||||||||| | ||||| ||||||||||||||
Sbjct 541 ACCAATACTACAATCAAGGGGGGCAATTTTGGCTTGTGCGATTCCGTGGATAAAGAGTCT 600
Query 613 GTTACTTACTCATTCTAGTGGAATTATGTCCCAAGAGTCATCATTACTCGCTTTAAACAC 672
|||||||||||||||||||||||||||||| ||||| ||||| || || || |||||||
Sbjct 601 GTTACTTACTCATTCTAGTGGAATTATGTCTCAAGAATCATCGTTGCTTGCACTAAACAC 660
Query 673 CATGTATCAGCTCATCGAATCACGGGTTTCAACTATTCATACTGCCGTAGAGGTTTCAAG 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 CATGTATCAGCTCATCGAATCACGGGTTTCAACTATTCATACTGCCGTAGAGGTCTCAAG 720
Query 733 TGGCTTGGACTTGATTGTGGACGACTTGGATGAAGAAGAAGATGAAGGTCCCGTGATCTA 792
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 TGGCTTGGACTTGATTGTGGACGACTTAGATGAAGAAGAAGATGAAGGTCCCGTGATCTA 780
Query 793 TGAGGACAAGGACAGTGATGAAGACGAAGAAGAAGGAATAGAGGAAGCAATGGAGACAGA 852
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 781 TGAGGACAAGGACAGTGATGAAGAAGAAGGAGAAGGAATAGAGGAAGCAATGGAGACAGA 840
Query 853 TGAAGAGGCAGACGACTCAGCAGATGAAGCTGCTGATGGTGTGAATGATTTTGAAGGATT 912
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 841 TGAAGAGGCAGACGACTCAGCGGATGAAGCAGCTGATGGTGTGAATGATTTTGAAGGATT 900
Query 913 TGACGACATGAGTGATTGATAAAGCTCCTGAAAATGGCAAAAGTTTTGATTTGTGTGAGG 972
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 TGACGACATGAGCGATTGATAAAGCTCCTGAAAAAGGCAAAAGTTTTGATTTGTGTGAGG 960
Query 973 CTGAT-G-TT----AGATGTTAAGAATATGGCTAAAAGGTTCAATCTTTCGTCAAGAAGT 1026
||||| | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 CTGATTGATTGTTTAGTTGTTAAGAATATGGCTAAAAGGTACAATCTTTCGTCAAGAAGT 1020
Query 1027 CTGTAATACGTAATGGTTATATCGATATGAACGAGACTTTGTGCTAAGGAAGAGTTAATT 1086
||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||| ||
Sbjct 1021 CTGTAATACGTAATGGTTATATCGATATGGACGAGACTTTGTACGCAGGAAGAATTAGTT 1080
Query 1087 TTT 1089
|||
Sbjct 1081 TTT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5