BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15430.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471744 jgi|Araly1|471744|fgenesh2_kg.1__1698__AT1G15430.1 1441 0.0
> Ahg471744 jgi|Araly1|471744|fgenesh2_kg.1__1698__AT1G15430.1
Length=1022
Score = 1441 bits (780), Expect = 0.0
Identities = 940/1014 (93%), Gaps = 23/1014 (2%)
Strand=Plus/Plus
Query 21 CATCTTCACCGTTTCATACGAAACTCTTTACGAGGAGtc--tctctttacttttctctct 78
||||||||||||||||||||||||||||||||||||| | | |||| || |||||||
Sbjct 29 CATCTTCACCGTTTCATACGAAACTCTTTACGAGGAG-CGAAC-CTTT--TTCTCTCTCT 84
Query 79 ctctcAAAGAAAGAAAGAAAAGCCTCTTTTAATTTTCTCCGGCCAGAGTGTGTGGGATGC 138
||||| |||||||| |||||||||||| | ||||||||||||||||||||| ||||
Sbjct 85 CTCTC--TCAAAGAAAG-AAAGCCTCTTTTCA-TTTCTCCGGCCAGAGTGTGTGATATGC 140
Query 139 ACAAGGAAAGAGGGAAAATGCCGGTTTCTAGCAACAGAAATAGAGTATCGCCATACCCGC 198
||||||||||| ||| |||||||||||| |||||||||||||| || ||||| || ||||
Sbjct 141 ACAAGGAAAGACGGATAATGCCGGTTTCAAGCAACAGAAATAGGGTTTCGCCTTATCCGC 200
Query 199 TTCGCTCTTGCAGGAACAAGAAACAAAAAGAAGTCGAGGCGTCGTCGTCACCTGTTGAGT 258
|||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 201 TTCGCTCTTGTAGGAACAAGAAACAAAAAGAAGTCGAGGCG--G-CCTCACCTGTTGAGT 257
Query 259 TAGAGAGTGTTAGTGAATGGGAGGATGTGAGGTGTGTGATTTGTATGGAGCCTCCTCACA 318
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 258 TAGAGAGTGTGAGTGAATGGGAGGATGTGAGGTGTGTGATCTGTATGGAGCCTCCTCACA 317
Query 319 ATGCTGTCCTCTTGCAATGCTCTTCTTTCTCCAAAGGATGTCGTGCTTACATGTGTGATA 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 318 ATGCTGTCCTCTTGCAATGCTCTTCTTTCTCCAAAGGATGTCGTGCTTACATGTGTGACA 377
Query 379 CAAGCGCTCGTCACTCCAATTGTTTCAAGCAGTACCGCAGAAGCAACAGCTCAAGCCGTT 438
||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 378 CAAGCGCCCGTCACTCCAACTGCTTCAAGCAGTACCGCAGAAACAACAGCTCAAGCCGTT 437
Query 439 GTAGTGGCAAGACTCTACATTGTCCCTACTGCAGAGGAGAGGTTCAGGGGACTATGAAGT 498
| || |||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 438 GCAGCGGCAAGACTCTAAACTGTCCCTACTGCAGAGGAGAGGTTCAGGGGACAATGAAGT 497
Query 499 CGACTTGTGCTCGGAGATTCATGAATGCTAGACCGAGGTGTTGTACTGTTGACAAGTGCG 558
||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 498 CGACTTGTGCTCGGAGATTCATGAATGCTAGACCGAGGTCTTGTTCTGTGGACAAGTGTG 557
Query 559 ATTTCTCAGGGACCTATGCGCAGCTGAAAAATCACTTGAAAACTGAGCATCCTGGTTTTA 618
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ATTTCTCAGGGACCTATGCTCAGCTGAAAAATCACTTGAAAACTGAGCATCCTGGTTTTA 617
Query 619 CACCGCCAAAGTTAGACCCTTGGGAGCAACACATGTGGGAGCAGTTGGAGAGAGAGGCGG 678
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 618 CACCTCCAAAGTTAGACCCTTGGGAGCAACACATGTGGGAGCAATTGGAGAGAGAGGCCG 677
Query 679 AGTACATTGAAATGCTCAACGCTCGTCAGAGATGGGATGCAGAACAGAGATTGTTGGCGA 738
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 678 AATACATTGAAATGCTCAATGCTCGACAGAGATGGGATGCAGAACAGAGATTGTTGGCGA 737
Query 739 CTTCTCTCCATCAGCTTCCATATCGTCATCCCATGATTGATCTCAACTTTGATGCGTTGG 798
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 CTTCTCTCCATCAGCTTCCATATCGCCATCCCATGATTGATCTCAACTTTGATGCGTTCA 797
Query 799 TGCATAATCTGTTTCTTGGTGCGTCCATGGAGAGCCGTGCAAGCACCGACAATTACCCGG 858
| |||||||||||||||||||| | |||| || ||||||||||||||||||||||
Sbjct 798 TCCATAATCTGTTTCTTGGTGCA---A-GGAG--CCAAGCAAGCACCGACAATTACCCGG 851
Query 859 CTCACATACCCCGTCTGGAGTTCCATGCCCC-CATGTATCCCAGATGGACGCCATGAAGA 917
|||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct 852 CTCACATACCCCGTCTGGAGTTCCATTCGCCGC-TGTATCCCAGATGGACGCCATGAAGA 910
Query 918 TTCTGAGTGCCAGAGTCTATGAGGAATTCTTCCAAAAGTTTTGATGTCTCTTGATTTTTA 977
|||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 911 TTCTGAATGCC-GAGTCTATGAGGAATTCGTCCAAA-GTTTTGATGTCTCTTGATTTTTA 968
Query 978 TCATAATGTAATGTTCTTGTAGCGACATCAGTTCTTGTTCTAGGCATAAATTTA 1031
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 969 TCATAATGTAATGTTCTTATAGCGACATCAGTTCTTGTTCTAGGCATAAATTTA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5