BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15470.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471748 jgi|Araly1|471748|fgenesh2_kg.1__1702__AT1G15470.1 2122 0.0
> Ahg471748 jgi|Araly1|471748|fgenesh2_kg.1__1702__AT1G15470.1
Length=1404
Score = 2122 bits (1149), Expect = 0.0
Identities = 1323/1402 (94%), Gaps = 31/1402 (2%)
Strand=Plus/Plus
Query 4 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAGATAACAAACCAAACTa 63
|||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAG-------A--AAA--G 49
Query 64 aaaaaaaaaaGTTTCTCCTTTTATCATTCCTTCTCTTCCCTTGT-ATAGGTGTGATCCTC 122
|||||||||||| ||||||||||||||||| ||| ||| ||| | |||||||||||||||
Sbjct 50 AAAAAAAAAAGTGTCTCCTTTTATCATTCCCTCTTTTCTCTT-TAATAGGTGTGATCCTC 108
Query 123 TTCAAGGGGATTTCTCTGGCGGGTCATACATTCGCACCGATCAAAGTCGGATTGGTCTTT 182
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 109 TTCAAGGGGATTTCTCTGGCTGGTCATACATTCGCACCGATCAAACTCGGATTGGTCTTT 168
Query 183 CTTAACGCAATCTTGACCCGATTCAAAAA--ATTTCTGGGTTTGTTAGTGAATAGATAAG 240
|||||||||||| || | ||||||||||| | ||||||||||||||||||||||| ||
Sbjct 169 CTTAACGCAATCCTGTCGCGATTCAAAAACGA-TTCTGGGTTTGTTAGTGAATAGACGAG 227
Query 241 AAGATAA-ATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 299
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AAAAAAAGATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 287
Query 300 CTTATAGTCCGGTGACTCCAGATGGGTTCTTTCTCATTAGCGCCAGCAAAGATTCGAATC 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 288 CTTATAGTCCGGTGACTCCAGATGGGTTCTTCCTCATTAGCGCCAGCAAAGATTCGAATC 347
Query 360 CGATGTTGAGGAATGGAGAGACTGGTGACTGGATTGGGACTTTTGAAGGACATAAGGGAG 419
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 348 CGATGTTGAGGAATGGGGAGACTGGTGACTGGATTGGAACTTTTGAAGGACATAAGGGAG 407
Query 420 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCTGATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 408 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCAGATT 467
Query 480 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 527
Query 540 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGTTTACTCACTGGTGGAATGG 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 528 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGCTTACTCACTGGTGGAATGG 587
Query 600 AGAAAATACTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGGA 659
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 588 AGAAAATTCTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGAA 647
Query 660 ATTCCCCTGGTTCAATTAGAACTGTCGAATGGCTTCATAGTGATAATACAATCTTAAGCT 719
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 648 ATTCCGCTGGTTCAATTAGAACCGTTGAATGGCTTCATAGTGATAATACAATCTTAAGCT 707
Query 720 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 767
Query 780 CATTAGAAACAAAGTCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 839
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CATTAGAAACAAAATCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 827
Query 840 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 887
Query 900 GCTATGACATGCCTTGCAATGTTGAATCGGCATCGTTGGAACCGAAACACGGTAACACTT 959
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 888 GCTATGACATGCCTTGCAATGTTGAATCGGCATCTTTGGAACCGAAACACGGCAACACTT 947
Query 960 TCATTGCTGGAGGAGAAGATATGTGGGTGCACAGGTTTGATTTCCAGACTGGAGAAGAGA 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 948 TCATTGCTGGAGGAGAAGATATGTGGGTGCATAGGTTTGATTTCCAGACTGGAGAGGAGA 1007
Query 1020 TTGGGTGTAACAAGGGTCATCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1079
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTGGGTGTAACAAGGGTCACCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1067
Query 1080 AGTCATACACCTCAGGCTCAGAAGACGGAACGGTCAGAATATGGGTGGTGGGTTCGGTAA 1139
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1068 AATCATACACATCAGGCTCAGAAGACGGAACAGTCAGAATATGGGTGGTGGGTTCAGTGA 1127
Query 1140 ACCATC-CTGAGGAGAGCAATCTAAGCGGCCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1198
|||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1128 ACCATCAC-GAGGAGAGCAATCCGAGCGGTCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1186
Query 1199 CGTAAAGCTGAAAGTCTCCGTATCAGTGAGAAAGCCGCAGAAGCTAAATGAAACACCATC 1258
|||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1187 CGTAAAGCGGAAAGTCTGCGTATCAATGAGAAAGCTGCAGAAGCTAAATGAAACATCATC 1246
Query 1259 GTTAGCTTATGATATCACATAGATTCATAGTT-GTTTTT--GCATCATTATAAGATGTGA 1315
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1247 GTTAGCTTATGATATGGCATAGATTCATAGTTTGTTTTTTTGCATCATTATAAGATGTGA 1306
Query 1316 CAAAGGGGTTTTGCCTTTTAAAAGTCTCTCA-GACCGAATAAAACGAA-ATAA-T----- 1367
|| |||| ||||||||||||||||||||||| ||| |||||||||||| |||| |
Sbjct 1307 CAGAGGG-TTTTGCCTTTTAAAAGTCTCTCAAGACGGAATAAAACGAACATAAATAATAT 1365
Query 1368 CTTCAACTATACTTGAGTGAAT 1389
||||||||||| ||||||||||
Sbjct 1366 CTTCAACTATATTTGAGTGAAT 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5