BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15480.1
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471749 jgi|Araly1|471749|fgenesh2_kg.1__1703__AT1G15480.1 3070 0.0
Ahg477224 jgi|Araly1|477224|fgenesh2_kg.2__2354__AT1G80270.1 885 0.0
> Ahg471749 jgi|Araly1|471749|fgenesh2_kg.1__1703__AT1G15480.1
Length=2042
Score = 3070 bits (1662), Expect = 0.0
Identities = 1924/2051 (94%), Gaps = 16/2051 (1%)
Strand=Plus/Plus
Query 1 CCTAAACCCTTAATTTGAGCTCTCTGCTCTCCTGG-TTTTAGTTTTCCTCTATTTCGTGC 59
||||||||||| ||| |||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1 CCTAAACCCTTCCTTTTAGCTCTCTGCTCTCCTGGTTTTTAGCTTTCCTCCATTTCGTGC 60
Query 60 TCAATTCGCTTGTTCTCCAGTTC-CACTC-TATCAGTGCCGGCGGCGATATTGTCCGAGG 117
||||||| |||| ||||||| || || | ||||||| | ||| ||| |||||||||
Sbjct 61 TCAATTCACTTG-TCTCCAG-TCTCAAGCAGATCAGTG-C--CGGAGATCTTGTCCGAGT 115
Query 118 ATAAAACATGTTTGCTCTTTCCAAGGTTTTGCGGAGAAGTCAGAGTCTCCGCCTAGGAGC 177
| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 116 AGAAGACATGTTTGCTCTTTCCAAGGTTTTACGGAGAAGTCAGAGTCTCCGACTAGGAGC 175
Query 178 TTGCAATGCTGTCTACTCTAAGCTAGATATACCATTGGGAGAAAGAAACATTGCTATTGA 237
||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 176 TTGCAATGCTGTCTACTCTAAGCTAGATATACCGTTGGAAGAAAGAAACAGTGCTATTGA 235
Query 238 ATCAAACGCTTTGATTCATGATAAACACGAAGCTTTGCCTAGATTTTATGAGCTCTCTTG 297
||| |||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||
Sbjct 236 ATCGAACGCTTTGATTCATGATAAACACGATGGTTTCCCTAGATTTTACGAGCTCTCTTG 295
Query 298 GTCTTCCTCTACCGGAAGACGTTCACTTTCCTCGGACGCTGGAGCTAAAACTACCGGAGA 357
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 296 GTCTTCCTCTACCGGAAGACGCTCACTTTCCTCTGACGCTGGAGCTAAAACAACCGGAGA 355
Query 358 TGACGATGACCTCGAAGACAAGAATGTAGACCTTGCAACTCCAGACGAGACTAGTAGTGA 417
||| ||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| |
Sbjct 356 TGAAGATGACCTCGAAGACAAGAATTTAGACATTGCTACTCCAAACGAGACTAGTAGTAA 415
Query 418 TAGTGAAGATG-GTGAGGAGTTTTCCGGTGATGAAGGGGATATTGAAGGAGCAGAGCTGG 476
||||||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 416 TAGTGAAGATGAG-GAGGAGTTTTCCGGTGATGAAGGTGCCATTGAAGGAGCAGAACTGG 474
Query 477 AACTACATGTCCCGG-AAAGCAAGAGACCATCGGAGATGTTTAAGGCCATTGTTTCTGTC 535
||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||||
Sbjct 475 AACTACATGTCCCGGCAAA-CAAAAGATCATCGGAGCTGTTTAAGGCCATTGTTTCTGTC 533
Query 536 TCAGGTCTGTCTGTAGGGAGTGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAAC 595
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 534 TCAGGTCTGTCTGTAGGGACTGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAGC 593
Query 596 CGTAAAGAGTTTGAAAGTGCGATGCTACAACTCCGTAAACGTCGGATGTTTGGGAGAGCA 655
|||| |||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 594 CGTACAGAGTTTGCAAGTGCGATGCTGCAACTCCGTATACGTCGGATGTATGGGAGAGCA 653
Query 656 TTGCAGATGACAGAATGGTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTAT 715
|||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||||
Sbjct 654 TTGCAGATGACAGAATGGTTGGACGATAATAAGCAGTTTGAACTGGAAGAGGGAGATTAT 713
Query 716 GCTTGTCGGCTTGATCTGATTTCCAAGGTACGTGGCTGGTACAAGGGAGAAGCTTATATC 775
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 714 GCTTCTCGGCTTGATCTGATTTCCAAGGTACGTGGCTTGTACAAGGGAGAAGCTTATATC 773
Query 776 AAAACAATCCCGGAATCTTTCAGAGGGGAATTGGTCTACCGAACCCTCCTGGCGAATCAT 835
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 774 GAAACAATCCCGGAATCTTTCAGAGGGGAATTGGTCTACAGAACCCTCCTGTCGAATTAT 833
Query 836 GTGGCAACTAGCAATGTGAGAACAGCTGAAGCAGTTTTCAACAAAATGAAGGACTTGGGA 895
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 834 GTGGCAACTAGCAATGTGAGGACAGCAGAAGCAGTTTTCAACAAAATGAAGGACTTGGGA 893
Query 896 TTCCCTCTGTCAACATTCACCTGTAATCAGATGCTTATTCTTTACAAAAGGGTCGACAAG 955
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 TTCCCTTTGTCAACATTTACCTGTAATCAGATGCTTATTCTTTACAAGAGGGTCGACAAG 953
Query 956 AAGAAAATAGCCGATGTGTTATTGCTGTTGGAGAAGGAAAATCTGAAGCCGAATCTTAAC 1015
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 954 AAGAAAATAGCCGATGTGTTATTGCTGATGGAGAAGGAAAATCTGAAGCCAAATCTTAAC 1013
Query 1016 ACATACAAAATCCTGATTGATACCAAAGGATCATCAAATGACATAACTGGGATGGAACAA 1075
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1014 ACATACAAAATCCTGATTGATACCAAAGGATTATTAAATGACATAACTGGGATGGAACAA 1073
Query 1076 ATTGTGGAGACAATGAAAAGTGAAGGTGTTGAGCTTGACCTTCGTGCACGAGCTCTCATT 1135
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 ATTGTGGAGACAATGAAAAGTGAAGGTGTTGAGCCTGACCTTCGTGCACGAGCTCTCATT 1133
Query 1136 GCAAGACACTATGCATCAGCTGGGCTTAAAGAGAAGGCTGAGAAAGTGCTGAAAGAGATG 1195
|| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1134 GCGAGAAACTATGCATCAGCTGGGCTTAAAGAGAAGGCTCAAAAAGTGCTGAAAGAGATG 1193
Query 1196 GAAGGTGAAAGCTTGGAGGAAAATCGGCATATGTGCAAGGATTTGCTTTCCGTCTATGGC 1255
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1194 GAAGGTGAAAGCTTGGAGGAAAATCGGCATGTGTGCAAGGATTTGCTTTCCGTGTATGGC 1253
Query 1256 TATCTCCAGAGGGAGGATGAAGTG-CGCAGAGTTTGGAAGATCTGTGAAGAAAACCCCCG 1314
| ||||||||||| |||||||||| | |||| |||||||||||||||||||||| |||||
Sbjct 1254 TTTCTCCAGAGGGCGGATGAAGTGAC-CAGAATTTGGAAGATCTGTGAAGAAAAACCCCG 1312
Query 1315 TTATAACGAGGT-CCTTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGTCAAAGATG 1373
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1313 TTATAAAGA-GTCCCTTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGTCAAAGAAG 1371
Query 1374 CAGAGGCGGTTTTTGAGAAGGTGTTGAAGATGTCCCATAGAGTTTCTTCTAATGTTTACT 1433
||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1372 CAGAGGCAGTTTTTGAGAAGATGTTGCAGATGTCCCGTAGAGTTTCTTCTAATGTTTACT 1431
Query 1434 CCGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CCGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTA 1491
Query 1494 AGCAGATGTCAGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAGC 1553
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AGCAGATGTCGGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAGC 1551
Query 1554 TCTATGTGGAAGCCGGGGAAGTAGAAAAGGCTGAGTCTTCACTGAGCAAGGCAATACAGT 1613
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TCTATGTGGAAGCTGGGGAAGTAGAAAAGGCTGAGTCTTCACTGAGCAAGGCAATACAGT 1611
Query 1614 CGAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACTTAATGCACGAGTATGTGAGAA 1673
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1612 CGAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACGTAATGGGCGAGTATGTGAGAA 1671
Query 1674 GGGGTGATGTTCATAACACAGAGAAAATCTTCCAGAGGATGAAGCAAGCTGGCTATCAAT 1733
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GGGGTGATGTTCACAACACAGAGAAAATCTTCCAGAGGATGAAGCAAGCTGGCTATCAAT 1731
Query 1734 CTCGCTTCTGGGCGTACCAAACCCTTATCCAAGCTTATGTCAATGCCAAAGCTCCAGCTT 1793
||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CTCGCTTAAGGACGTACCAAGCCCTTATCCAAGCTTATGTCAATGCCAAAGCTCCAGCTT 1791
Query 1794 ATGGAATGAAGGAAAGAATGAAAGCTGATAACATCTTCCCAAATAAAAGATTAGCTGCTC 1853
||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1792 ATGGAATGAAGGATAGAATGAAAGCTGATAACATCTTCCCCAACAAAGGATTAGCTGCTC 1851
Query 1854 AACTCGCTAAAGCCGATCCCTTCAAGAAGACCCCTCTCTCGGATCTCCTTGATTGAGTTG 1913
| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1852 AGCTCATTAAAACCGATCCCTTCAAGAAGACCCCTCTCTCCGATCTCCTTGATTGAGTTG 1911
Query 1914 CGTTACAGCTACAACATCATCCGCCTTGTGAATCTTTGGTTTGATTGATCAACCTTTTAT 1973
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AACTGCAGCTACAACATCATCCGCCTTGTGAATCTTTGGTTTGATTGATCAACCTTTTAT 1971
Query 1974 CCATGTTGGTAGAAACTTCAGTAGCTTAGTTTAAAAAAGACCTCCTGATATATAAATTCT 2033
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||
Sbjct 1972 CCATGTTGGTAGAAACTTCAGTAGCTTAGTTTAAATAAGTCCTCATGATATATAAACTCT 2031
Query 2034 GTTTGGTTGCT 2044
|||||||||||
Sbjct 2032 GTTTGGTTGCT 2042
> Ahg477224 jgi|Araly1|477224|fgenesh2_kg.2__2354__AT1G80270.1
Length=1944
Score = 885 bits (479), Expect = 0.0
Identities = 1138/1450 (78%), Gaps = 70/1450 (5%)
Strand=Plus/Plus
Query 497 AAGAGACCATCGGAGATGTTTAAGGCCATTGTTTCTGTCTC-AGGTCTGTCTGTAGGGAG 555
|||| |||||| ||| | |||||| ||||||| || | | | |||||||||| |||| ||
Sbjct 382 AAGAAACCATCTGAGCTATTTAAGACCATTGTCTCCG-CACCAGGTCTGTCTATAGGTAG 440
Query 556 TGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAAC-CGTAAA-GAGTTTGA-AAG 612
||| |||||||||||||| ||| ||||||| || | || | || | ||| ||| |||
Sbjct 441 TGCACTTGATAAGTGGGTGGAAGAAGGAAATGAGATCA-CTCG-AGTCGAGGTTGCTAAG 498
Query 613 TGCGATGCTACAACTCCGTAAACGTCGGATGTTTGGGAGAGCATTGCAGATGACAGAATG 672
|| ||||| || || || | |||||||||| ||| ||||| ||||||||| |||||||
Sbjct 499 -GCAATGCTCCAGCTGCGCAGGCGTCGGATGTATGGAAGAGCGTTGCAGATGTCAGAATG 557
Query 673 GTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTATGCTTGTCGGCTT-GATC 731
||| || | ||||||| | |||||||| | |||||||||||| ||| |||| || ||||
Sbjct 558 GTTGGAAGCAAATAAGAAAATTGAAATGAATGAGAGAGATTATTCTTCTCGG-TTAGATC 616
Query 732 TGAT--TTCCAAGGTACGTGGCTG-GTACAAGGGAGAAGCTTATAT-CAAAACAATCCCG 787
||| || ||| ||||||||| | | || |||||||||||||| || || | |||||
Sbjct 617 TGACAGTT--AAGATACGTGGCTTAGAA-AATGGAGAAGCTTATATGCAGAAGA-TCCCG 672
Query 788 GAATCTTTCAGAGGGGAATTGGTCTACCGAACCCTCCTGGCGAA-TCATGTGGCAACTAG 846
||||||||| ||||||| || | ||||| |||||| ||||||| | |||||| || |
Sbjct 673 AAATCTTTCAAAGGGGAAGTGATTTACCGTACCCTCTTGGCGAACTG-TGTGGCTGCTGG 731
Query 847 CAATGTGA-GAACAGCTGAAGCAGTT-TTCAACAAAATGAAGGACTTGGGATTCCCTCTG 904
|||||||| ||| | | ||| | | | ||||||| ||||||||||||||||||||||||
Sbjct 732 CAATGTGAAGAA-ATCCGAA-CTGGTGTTCAACAGAATGAAGGACTTGGGATTCCCTCTC 789
Query 905 TCAACATTCACCTGTAATCAGATGCTTATTCTTTACAAAAGGGTCGACAAGAAGAAAATA 964
|| ||| || ||| ||||||||||| | || ||||| ||| |||||| |||||||||
Sbjct 790 TCTGGATTTACTTGTGATCAGATGCTTCTCCTCTACAAGAGGATCGACAGGAAGAAAATT 849
Query 965 GCCGATGTGTTATTGCTGTTGGAGAAGGAAAATCTGAAGCCGAA-TCTTAACACATACAA 1023
|| |||||| ||||||| ||||||| |||||| | ||||| || |||| ||| |||||
Sbjct 850 GCTGATGTGCTATTGCTCATGGAGAAAGAAAATGTCAAGCC-AAGTCTTCTCACTTACAA 908
Query 1024 AATCCTGATTGATACCAAAGGATCATCAAATGACATAACTGGGATGGAACAAATTGTGGA 1083
||||||||||||| |||||| || |||||||||||| ||||||||| |||||| ||||
Sbjct 909 AATCCTGATTGATGTCAAAGGGGCAACAAATGACATAAGTGGGATGGAGCAAATTTTGGA 968
Query 1084 GACAATGAAA-AGTGAAGGTGTTGAGCTTGACCTTCGTG-CACGAGCTCTCATTGCAAGA 1141
|||||||||| | |||||||||||| | ||| ||| | ||| |||||||| ||| |||
Sbjct 969 GACAATGAAAGA-TGAAGGTGTTGAACCGGAC-TTCCAGACACAAGCTCTCACTGCTAGA 1026
Query 1142 CACTATGCATCAGCTGGGCTTAAAGAGAAGGCTGAGAAAGTGCT-GAAAGAGATGGAAGG 1200
|||||| | |||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 1027 CACTATTCGGGAGCTGGGCTTAAAGAGAAAGCCGAGAAAGT-CTTGAAAGAGATGGAAGG 1085
Query 1201 TGAAAGCTTGGAGGAAAATCGGCATATGTGCAAGGATTTGCTTTCCGTCTATGGCTATCT 1260
||||||||| |||| |||||| | || ||| |||||||| ||| |||||| || |||
Sbjct 1086 TGAAAGCTTAGAGGCAAATCGCCGGGCGTTCAAAGATTTGCTCTCCATCTATGCCTCTCT 1145
Query 1261 CCAGAGGGAGGATGAAGTGC-GCAGAGTTTGGAAGATCTGTGAAGAAAACCCC--CGTTA 1317
||| || ||||||||| | ||| | ||||||||||||||| ||| ||| | ||
Sbjct 1146 TGGGAGAGAAGATGAAGTGAAG-AGAATATGGAAGATCTGTGAATCAAAGCCCTAC-TT- 1202
Query 1318 TAACGAGGTCC-TTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGT-CAAAGATGCA 1375
| | || ||| ||||||||||| |||||||||||| || ||||||| ||| || |||
Sbjct 1203 TGAGGAA-TCCCTTGCTGCAATCCACGCTTTTGGAAAGCTCAATAAAGTGCAA-GAAGCA 1260
Query 1376 GAGGCGGTTTTTGAGAAGGT-GTTGAAGATGTCCCATA-GAGTTTCTTCTAATGTTTACT 1433
|||||| ||||||||||| | || ||||||| | | | ||| |||||||||| |||||
Sbjct 1261 GAGGCGATTTTTGAGAAGATTGT-GAAGATGGGC-AGAAGAGCTTCTTCTAATACTTACT 1318
Query 1434 CCGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTA 1493
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||
Sbjct 1319 CCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATCTCGTTA 1378
Query 1494 AGCAGA-TGTCAGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAG 1552
| | || || | || ||||| |||| || | ||| |||||||||||| | ||||||
Sbjct 1379 AAC-GAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCATCAAG 1437
Query 1553 CTCTATGTGGAAGCCGGGGAAGTAGAAAAGGCTGAGTCTTCACTG-AGCAAGGCAAT-AC 1610
|||||||||||||| |||||||| ||||||||||| |||| ||| | ||||||| | |
Sbjct 1438 CTCTATGTGGAAGCTGGGGAAGTTGAAAAGGCTGATTCTTTGCTGGA-CAAGGCA-TCAA 1495
Query 1611 AGTC-GAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACT-TAATGCACGAGTATGT 1668
| | || || | |||| | |||||| |||||||||||| | | ||| |||| || |
Sbjct 1496 AA-CAGAGCCATACAAAACTGATGATGAACTCCTTCATGTA-TATCATGGACGAATAC-T 1552
Query 1669 GAGAA-GGGGTGATGTTCATAACACAGAGAAAATCTTCC-AGAGGATGAAGCAAGCTGGC 1726
| || |||| |||||||||||||||||||| | |||| | | |||| | ||| |||
Sbjct 1553 CAAAACGGGGAGATGTTCATAACACAGAGAAGGTATTCCTAAAA-ATGAGGGAAGTTGGG 1611
Query 1727 TAT-CAATCTCG-CTTCTGGGC-GTACCAAACCCTTATCCAAGCTTATGTCAATGCCAAA 1783
||| || ||||| ||| || | || |||| | || | || ||||| | || ||||||
Sbjct 1612 TATACA-TCTCGGCTTA-GG-CAGTTCCAAGCTCTCCTGCAGGCTTACATAAACGCCAAA 1668
Query 1784 GCTCCAGCTTATGGAATGA-AGGAAAGAATGAAAGCTGATAACATCTTCCCAAATAAAAG 1842
|| || || ||||||||| || | ||||||||||| ||||| || || ||||| |||
Sbjct 1669 GCCCCTGCATATGGAATGCGAG-ATAGAATGAAAGCCGATAATATATTTCCAAACAAATC 1727
Query 1843 -ATTAGCTGCTCAACTCGCTAAAGCCGATCCCTTCAAGAAGACCCCTCTCTCGGATCTCC 1901
|| ||||| || | ||| ||| ||||| || |||||||| || |||| ||| | |
Sbjct 1728 CATG-GCTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTC 1786
Query 1902 TTGATTGAGT 1911
| ||||||||
Sbjct 1787 TGGATTGAGT 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78275453475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5