BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15490.1
Length=2664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471750 jgi|Araly1|471750|fgenesh2_kg.1__1704__AT1G15490.1 3637 0.0
Ahg477223 jgi|Araly1|477223|fgenesh2_kg.2__2353__AT1G80280.1 1681 0.0
> Ahg471750 jgi|Araly1|471750|fgenesh2_kg.1__1704__AT1G15490.1
Length=2602
Score = 3637 bits (1969), Expect = 0.0
Identities = 2166/2262 (96%), Gaps = 10/2262 (0%)
Strand=Plus/Plus
Query 405 TAAAATTTGAATTGGTGAGGAGGAGTTAGAGCCGTCCGATTGGGGTTTGACCCGATTGAA 464
||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 345 TAATATTTGAATTGGTGAGGAGGATTTAGAGCCGTCCGATTGGGGTTGGACCCGATTGAA 404
Query 465 GCGGAGAGGATGGCAAAAAGTTGGTTTTTGGTTGAGAAGGCGAGAAGATGTTTGAGGACG 524
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 405 GCGGAGAGGATGGCAAAAAGTTGGTTTTTGGTTGAAAAGGCGAGAAGATGTTTGAGGACG 464
Query 525 GTGTTCTTCATGGTTGCTATGTTGGCTTCGCTGCTAGTTTCCTCGTTGCCATTGTTAGTA 584
||||||||||||||||| ||||||||||| ||| ||||||| || |||||||||||||||
Sbjct 465 GTGTTCTTCATGGTTGCCATGTTGGCTTCTCTGTTAGTTTCGTCCTTGCCATTGTTAGTA 524
Query 585 GCTATAGGTGATGTGTTGGTTCCC-AGCTTCTTGTTGTCGAGCTTTACTTGTGTGACGTG 643
|||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||
Sbjct 525 GCTATAGGTGATGTTTTGG-TCCCGAGCTTCTTGTTGTCGAGCTTTACTTGCGTTACGTG 583
Query 644 TTACGGCGCCAAGGAGCATCTGAGGCGATACGGTTTCAAGAGATCTTTGACTGATATTCC 703
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 584 TTACGGCGCCAAGGAGCATCTGAGGCGATACGGTTTCAAGAGATCTTTAACTGATATTCC 643
Query 704 TATCGTCTCTGTTGTCAGATCTTTCCTTGTCATCTGTATCTATTTACTCTCGGACGTTCC 763
||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 644 TATCGTCTCCGTTGCCAGATCTTTCCTTGTCATCTGTGTCTATTTACTCTCGGACGTTCC 703
Query 764 TGCTCTCTCGCACGGTCCTTACCTTGGAACTGTATCTCTGTGTTCTGTGGTTTCGGTTCT 823
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 704 TGCCCTCTCGCACGGTCCTTACCTTGGAACTGTATCTCTGTGTTCTGTAGTTTCGGTTCT 763
Query 824 TCTTCTTTCAGTTAAAGCTTGCCTTTTCACTGTTAATTCTCAACTCAACAACGAAGCCTC 883
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCTTCTGTCAGTTAAAGCTTGCCTTTTCACTGTTAATTCTCAACTCAACAACGAAGCCTC 823
Query 884 GTTCTCTCCATCTAGGAAACGGCTCCACCTGAAGAAGTCGTGGGGGATGCCGGTTTTGTT 943
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GTTCTCTCCATCTAGGCAACGGCTCCACCTGAAGAAGTCGTGGGGGATGCCGGTTTTGTT 883
Query 944 CCTCTCATCTGTGGTTTTTGCCCTTGGTCATACGGTTGTAGCATACAGGACAAGTTGCAG 1003
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 884 CCTCTCATCTGTGGTTTTTGCCCTTGGTCATACGGTTGTAGCTTACAGGACAAGTTGCAG 943
Query 1004 AGCGAGGAGGAAAATTTTGTATCACCGAGTTGACCCTGAAGCTGTTCTTTCATGCAAAAG 1063
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 944 AGCAAGGAGGAAAATTTTGTATCACAGAGTTGACCCTGAAGCTGTTCTTTCATGCAAAAG 1003
Query 1064 CATCTTCTCTGGCCACCAGAAAGTCCCGCGGTCACCCACTCCTGTGGTTGGAAAGGCCTC 1123
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1004 CATCTTCTCTGGCCACCAGAAAGTCCCGCGGGCACCCACTCCTGTGGTTGGCAAGGCCTC 1063
Query 1124 CAAGTTTGATGGAGAAGCAAGGCGAAAGCCTTTGTCCCACGATGAAGGAGAGCTTCCAGT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CAAGTTTGATGGAGAAGCAAGGCGAAAGCCTTTGTCCCACGATGAAGGAGAGCTTCCAGT 1123
Query 1184 GAGATTGCTTGCTGATGTTGACAGTTTATTCGTTACAATCCGAGGCCTCACTGTGCATTA 1243
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1124 GAGATTGCTTGCTGATGTTGACAGTTTATTCATTACAATCCGAGGGCTCACTGTGCATTA 1183
Query 1244 CAAGCTTTGTTCACCTGGTTCACCTCGGCAGTCTATCTCCTCAAATGTTCTCGAAGCCAA 1303
||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1184 TAAGCTTTGTGCACCTGGTTCGCCTCGGCAGTCTATCTCCTCAAATGTCCTCGATGCCAA 1243
Query 1304 TTCTAGTTACAATACGCCAGAGATAATGGCAGGAAGGTCGAAGTTTGACAGAAAAGTGTT 1363
||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 1244 TTCTAGTTACAATACGCCAGAGACAATGGCAGGAAGGTTGAAGTTTGACAGGAAAGTGTC 1303
Query 1364 GAGTATGGTCACCAAAAGCCAGCATCATCATCACCACAGGAGCTACAACAGTTTGTTTAA 1423
||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1304 GAGCATGGTTACGAAAAGCCAGCATCATCATCACCACAGGAGCTACAGCAGTTTGTTTAA 1363
Query 1424 CAATTCTTCCTTGCACGACCCTCTTCTGGATGGTTCTCCTACTTCTCCTCTTCTTTTCAA 1483
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1364 CAATTCTTCGTTGCACGACCCTCTTCTTGATGGTTCTCCTACTTCTCCTCTTCTTTTCAA 1423
Query 1484 AGAGATTAAGGAAGGAACGGGACTAGTGGATGACATGAATGTATTCAATTTTGGAGCTGA 1543
||| ||| ||||||||||| | |||| |||| |||||||| | |||||||||||||||||
Sbjct 1424 AGAAATTCAGGAAGGAACGAGCCTAGAGGATAACATGAATATGTTCAATTTTGGAGCTGA 1483
Query 1544 GGAGCAAGACTTGGGTGAAAGTGGTCAGTTTGGTGTGGTCCTGGTTCATGGATTTGGAGG 1603
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GGAGCAAAACTTGAGTGAAAGTGGTCAGTTTGGTGTGGTCCTGGTTCATGGATTTGGAGG 1543
Query 1604 AGGAGTGTTTTCTTGGAGGCATGTGATGGGTTCACTGGCTCAGCAGCTTGGTTGTGTTGT 1663
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1544 AGGAGTGTTTTCTTGGAGGCATGTGATGGGTTCACTGGCTCAGCAGCTTGGCTGTGTTGT 1603
Query 1664 CACTGCATTTGATAGGCCTGGTTGGGGATTAACGGCCAGGCCACATAAGAATGATTTGGA 1723
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1604 CACTGCATTTGATAGGCCTGGTTGGGGATTAACAGCCAGGCCACATAAGAATGATTTGGA 1663
Query 1724 AGAAAGACAGCTGCTCAATCCTTATTCACTCGAAAATCAGGTAGAGATGCTTATTGCTTT 1783
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1664 AGAAAGACAGCTGCTCAATCCTTATACACTCGAAAATCAGGTAGAGATGCTTATTGCTTT 1723
Query 1784 CTGTTATGAGATGGGGTTCTCTTCAGTAGTATTTGTTGGTCATGATGACGGAGGTCTACT 1843
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1724 CTGTTATGAGATGGGGTTTTCTTCAGTAGTATTTGTTGGTCATGATGATGGAGGTCTACT 1783
Query 1844 TGCTCTCAAAGCTGCACAAAGATTGATGGCAACAAACGATCCCATCAAAGTCGTGGTCAA 1903
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1784 TGCTCTCAAAGCTGCACAAAGATTGATAACAACAAACGATCCCATCAAAGTCGTGGTCAA 1843
Query 1904 AGGAGTTGTCTTGCTTAATACTAGCTTATCAAGGGAAGTAGTTCCAGCTTTTGCAAGAAT 1963
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1844 AGGAGTTGTCTTGCTTAATACTGGCTTATCAAGGGAAGTAGTTCCAGCTTTTGCAAGGAT 1903
Query 1964 ACTTCTGCACACATCACTAGGGAAGAAGCACCTCGTTCGCCCTCTTTTACGCACTGAGAT 2023
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 ACTTCTGCACACCTCACTAGGGAAGAAGCACCTCGTTCGCCCTCTTTTACGCACTGAGAT 1963
Query 2024 AGCTCAGGTGGTGAATCGCCGTGCTTGGTATGATCCTGCCAAGATGACTACAGACGTCCT 2083
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1964 AGCTCAGGTGGTGAATCGCCGCGCTTGGTATGATCCTGCCAAGATGACTACAGACGTCCT 2023
Query 2084 ACGGCTATACAAGGCCCCATTACACGTAGAAGGCTGGGATGAGGCACTT-CATGAGATAG 2142
| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 2024 AAGGCTATACAAGGCCCCACTACACGTAGAAGGCTGGGATGAGGCA-TTACATGAGATAG 2082
Query 2143 GTAGACTTTCATCTGAGATGGTGCTTGCACCTCAAAATGCAGCTTCGCTTCTGAAGGCTG 2202
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2083 GTAGACTCTCATCTGAGATGGTGCTTGCACCTCAAAATGCAACTTCGCTTCTGAAGGCTG 2142
Query 2203 TTGAAAACCTGCCAGTGCTAGTCATTGCTGGGGCCGAAGACGCCCTTGTGCCATTGAAGT 2262
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TGGAAAACCTGCCAGTGCTAGTCATTGCTGGGGCCGAAGACGCCCTTGTGCCATTGAAGT 2202
Query 2263 CCTCCCAAGGAATGGCTTCTAAACTCCTTAACTCTAGACTAGTAGCAATCTCAGGATGTG 2322
||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 2203 CCTCCCAAGCAATGGCTTCTAAACTTCTAAACTCTAGACTGGTAGCAATCTCAGGATGTG 2262
Query 2323 GGCATTTACCACATGAGGAGTGTCCCAAGGCGCTTCTTGCAGCCATGTCCCCGTTCATCA 2382
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 GGCATCTACCACACGAGGAGTGTCCCAAGGCGCTTCTTGCAGCCATGTCCCCGTTCATCA 2322
Query 2383 CTAGACTTGTAATTAGGCCAGATCTCCAGAGTCAATAGCCAGATCACTTGTTTTTCTTGT 2442
||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2323 CTAGACTTGTACTTAGGCCAGATCTCCAGAGTCAATAGCCAGATGTCTTCTTTTCCTTGT 2382
Query 2443 CGTCTTCTTAGCTTACAATCGATTAGTGTCGCCCAAAAATTTGAGGCCCTGCTAGGTAAA 2502
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2383 CGTCTTCTTAGCTTACAATCGATTAGTGCCGCCCAAAAATTTGAGGCCCTGCTAGGTAAA 2442
Query 2503 TTCATCTAA-TGAGTGTTGTAACCTTTCCCTTCTCTTGTGT-TTTG-TATGATTCGAGGG 2559
||||||||| | |||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 2443 TTCATCTAAAT-AGTGTTGTAACCTTTCGTTTCTCTTGTGTGTTTTATATGATTCGAGGG 2501
Query 2560 TGATTTTA-TTTATTAAACACTTGAAGATGAGTGTGGCACAGAATCGTGCAAGTCTCTGT 2618
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 T-ATTTTTCTTTATTAAACACTTGAAGATGAGTGTGGCACAGAATCGTGCAAGTCTCTGT 2560
Query 2619 AAATTTATCCGGTTTGGAATACGAAGTAAATTGCTTTCGTTT 2660
|||||||||||||||||||||| ||||||||||||||| |||
Sbjct 2561 AAATTTATCCGGTTTGGAATACAAAGTAAATTGCTTTCCTTT 2602
> Ahg477223 jgi|Araly1|477223|fgenesh2_kg.2__2353__AT1G80280.1
Length=2552
Score = 1681 bits (910), Expect = 0.0
Identities = 1632/1970 (83%), Gaps = 91/1970 (5%)
Strand=Plus/Plus
Query 467 GGAGAGGATGGCAAAAAGTTGGTTTTTGGTTGAGAAGGCGAGAAGATGTTTGAGGACGGT 526
||| || |||| ||| |||||||| |||| ||||| ||||||||||| || ||||| ||
Sbjct 370 GGAAAGAATGGGGAAAGGTTGGTTTATGGTAGAGAAAGCGAGAAGATGCTTAAGGACCGT 429
Query 527 GTTCTTCATGGTTGCTATGTTGGCTTCGCTGCTAGTTTCCTCGTTGCCAT-TG-TTAGTA 584
|||||||||||||| |||||||| |||||| ||||||| |||||||| | || || |||
Sbjct 430 CTTCTTCATGGTTGCGATGTTGGCCTCGCTGTTAGTTTCGTCGTTGCC-TGTGCTT-GTA 487
Query 585 GCTATAGGTGATGTGTTGGTTCCCAGCTTCTTG-TTGTCGAGCTTTACTTGTGTGACGTG 643
|| ||||| || ||||||||||| | ||| ||| || ||||||||||||||| |||||||
Sbjct 488 GCCATAGGCGACGTGTTGGTTCCGACCTTTTTGCTT-TCGAGCTTTACTTGTTTGACGTG 546
Query 644 TTACGGCGCCAAGGAGCATCTGAGGCGATACGGTTTCAAGAGATCTTTGACTGATATTCC 703
|||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 547 CTACGGCTTTAAGGAGCATCTGAGTCGATACGCTTTCAAGAGCTCTTTGACTGATATTCC 606
Query 704 TATCGTCTCTGTTGTCAGATCTTTCCTTGTCATCTGTATCTA-TTTACTCTCGGACGTTC 762
| | ||||| | |||||||||||||||||||||||| |||| | | || || || | ||
Sbjct 607 TCTTGTCTCCCTCGTCAGATCTTTCCTTGTCATCTGTGTCTACTCT-CTATCCGATGCTC 665
Query 763 CTGCTCTCTCGCACGGTCCTTACCTTGGAACTGTATCTCTGTGTTCTGTGGTTTCGGTTC 822
|||| ||||||||||| |||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 666 CTGCACTCTCGCACGGCCCTTACCTAGGAACTGTGTCGCTGTGTTCTGTTGTTTCAATTA 725
Query 823 TTCTTCTTTCAGTTAAAGCTTGCCTTTTCACTGTTAATTCTCAACTCAACAACGAAGCCT 882
||||||| ||||| ||||||||| |||| |||| ||||||||||| ||| ||||||||
Sbjct 726 TTCTTCTATCAGTAAAAGCTTGCGTTTTTACTGCAAATTCTCAACTTAACGCCGAAGCCT 785
Query 883 CGTTCTCTCCATCTAGGAAACGGCTCCACCTGAAGAAGTCGTGGGGGATGCCGGTTTTGT 942
||| |||||| || ||| |||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct 786 CGTCCTCTCCGTCAAGGCAACGACTCCATCTGAAGAAGTCTTGGGGGATGCCAGTTTTGT 845
Query 943 TCCTCTCATCTGTGGTTTTTGCCCTTGGTCATACGGTTGTAGCATACAGGACAAGTTGCA 1002
|||| || |||||||||||||| |||||||||| |||||| || || || ||||||||||
Sbjct 846 TCCTTTCGTCTGTGGTTTTTGCTCTTGGTCATATGGTTGTTGCTTATAGAACAAGTTGCA 905
Query 1003 GAGCGAGGAGGAAAATTTTGTATCACCGAGTTGACCCTGAAGCTGTTCTTTCATGCAAAA 1062
|||| ||||||||| | ||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 906 GAGCTAGGAGGAAACTCTTGTATCACAGAGGGGACCCTGAAGCTGTTCTTTCTTGCAAAA 965
Query 1063 GCATCTTCTCTGGCCACCAGAAAGTCCCGCGGTCACCCACTCCTGTGGTTGGAAAGGCCT 1122
| |||||||||| ||||||||||||| || || |||| |||| |||| ||||||||||
Sbjct 966 GTGTCTTCTCTGGTTACCAGAAAGTCCCACGTTCTCCCATTCCTTTGGTAGGAAAGGCCT 1025
Query 1123 CCAAGTTTGATGGAGAAGCAAGGCGAAAGC--C-T--TT--G--TCCCACGATGAAGGAG 1173
||||| ||||||| || || || ||||||| | | || | ||| ||||||||||||
Sbjct 1026 CCAAGATTGATGGCGAGGCTAGACGAAAGCTGCATCCTTCAGCATCCAACGATGAAGGAG 1085
Query 1174 AGCTTCCAGTGAGATTGCTTGCTGATGTTGACAGTTTATTCGTTACAATCCGAGGCCTCA 1233
|||| || | |||||||||||||||| ||||||| |||||| ||||| || |||| ||||
Sbjct 1086 AGCTCCCTGCGAGATTGCTTGCTGATCTTGACAGCTTATTCATTACAGTCAGAGGGCTCA 1145
Query 1234 CTGTGCATTACAAGCTTTGTTCACCTGGTTCACCTCGGCAGTCTATCTCCTCAA-ATGTT 1292
|||||||||||||| |||| |||||||| | |||| || | | ||||| | | |
Sbjct 1146 CTGTGCATTACAAGATTTGCACACCTGGTACTCCTC-GC---C-A----CTCAACA-G-T 1194
Query 1293 CTCGAAGCCAATTCTA-G-TTACAATACGCCAGAGATAATGGCAGGAAGGTCGAAGTTTG 1350
| |||||||| |||| | || || | ||||||| ||||| ||||||| |||| |||
Sbjct 1195 -T-GAAGCCAACTCTATGCTT--AACATGCCAGAGGCCATGGCGGGAAGGTTGAAGCTTG 1250
Query 1351 ACA-GAAAAGTGTTGAGTATGGTCACCA-AAAGCCAG--C-ATCATCATCACCACAGGAG 1405
||| ||| | | |||| |||||||| | ||| | || | ||||||| ||||| |||||
Sbjct 1251 ACAGGAATA-TACTGAGCATGGTCACGAGAAA-CAAGCTCAATCATCACCACCATAGGAG 1308
Query 1406 CTACAACAGTTTGTTTAACAA---TTCTTCCTTGCACGACCCTCTTCTGGATGGTTCTCC 1462
||||| ||| | |||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1309 CTACAGTAGTCTCTTTAACAATTCTTCTTCCTTGCACGACCCTCTCCTAGATGGTTCTCC 1368
Query 1463 TACTTCTCCTCTTCTTTTCAAAGAGATTAAGGAAGGAACGGGACTAGTGGATGACATGAA 1522
||||||| | | || || || | || ||| | || | | || ||||| ||| ||
Sbjct 1369 TACTTCT-C-C-TC--GTC--AG-G---AA-GAA-G--CGTGCCGAGAGGATGTCATCAA 1413
Query 1523 TGTATTCAATTTTGGAG---CTGAGGAGCAAGACT-TGGGTGAAAGTGGTCAGTTTGGTG 1578
||| | ||||||||| | | || ||||| | | ||||| ||| ||||| |||||||
Sbjct 1414 TGTGTCCAATTTTGGTGCCACGGAACAGCAA-AATGCGGGTGGAAGCGGTCAATTTGGTG 1472
Query 1579 TGGTCCTGGTTCATGGATTTGGAGGAGGAGTGTTTTCTTGGAGGCATGTGATGGGTTCAC 1638
| || |||| ||||||||||| |||||||||||||||||||| |||||||||| ||| |
Sbjct 1473 TTGTGTTGGTCCATGGATTTGGCGGAGGAGTGTTTTCTTGGAGACATGTGATGGCTTCTC 1532
Query 1639 TGGCTCAGCAGCTTGGTTGTGTTGTCACTGCATTTGATAGGCCTGGTTGGGGATTAACGG 1698
| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1533 TTGCCCATCAGCTTGGCTGTGTTGTCACTGCATTTGATAGGCCTGGTTGGGGATTAACCG 1592
Query 1699 CCAGGCCACATAAGAATGATTTGGAAGAAAGACAGCTG-CTCAATCCTTATTCACTC--G 1755
|||| || ||||| || ||||||||||||||| || || || || ||||| ||||| |
Sbjct 1593 CCAGACCTCATAAAAAGGATTTGGAAGAAAGAGAGATGCCT-AACCCTTA--CACTCTGG 1649
Query 1756 AAAATCAGGTAGAGATGCTTATTGCTTTCTGTTATGAGATGGGGTTCT-CTTCAGTAGTA 1814
||||||||||||| |||||| ||||||| || | || |||| || | |||| |||||
Sbjct 1650 AAAATCAGGTAGATATGCTTCTTGCTTTTTGCCACGAAATGGAATT-TGCTTCTGTAGTC 1708
Query 1815 TTTGTTGGTCATGATGACGGAGGTCTACTTGCTCTCAAAGCTGCACAAAGATTGATGGCA 1874
|| ||||| |||||||| |||||| | ||||||||||| ||||||||||||||| | | |
Sbjct 1709 TTGGTTGGCCATGATGATGGAGGTTTGCTTGCTCTCAAGGCTGCACAAAGATTGCTAG-A 1767
Query 1875 A-CAAACGATCCCATCAAAGTCGTGGTCAAAGGAGTTGTCTTGCTTAATACT-AGCTT-A 1931
| |||| |||||||||||| || |||||||| || ||||||||| | ||||| |
Sbjct 1768 ATCAAAAGATCCCATCAAA------GTAAAAGGAGTGGTTTTGCTTAAT-GTAAGCTTGA 1820
Query 1932 TCAAGGGAAGTAGTTCCAGCTTTTGCAAGAATACTTCTGCACACATCACTAGGGAAGAAG 1991
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1821 -CGAGGGAAGTAGTGCCAGCTTTTGCAAGAATACTTCTGCACACATCACTAGGAAAGAAA 1879
Query 1992 CACCTCGTTCGCCCTCTTTTACGCACTGAGATAGCTCAGGTGGTGAATCGCCGTGCTTGG 2051
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1880 CACCTCGTTCGCCCGCTTTTACGCACTGAAATAGCTCAGGTGGTGAATCGCCGAGCTTGG 1939
Query 2052 TATGATCCTGCCAAGATGACTACAGACGTCCTACGGCTATACAAGGCCCCA-TTACACGT 2110
|||||||||||||||||||| ||||| ||| || ||||||||||||| ||| || || ||
Sbjct 1940 TATGATCCTGCCAAGATGACAACAGATGTCTTAAGGCTATACAAGGCACCACTT-CATGT 1998
Query 2111 AGAAGGCTGGGATGAGGCACTTCATGAGATAGGTAGACTTTCATCTGAGATGGTGCTTGC 2170
||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| |
Sbjct 1999 GGAAGGCTGGGATGAGGCGCTTCACGAGATAGGCAGACTCTCATCTGAGATGGTGCTTCC 2058
Query 2171 ACCTCAAAATGCAGCT-TCGCTTCTGAAGGCTGTTGAAAACCTGCCAGTGCTAGTCATTG 2229
| ||||||||||| | || ||||| ||||| || |||||| | ||||| ||||| |||
Sbjct 2059 AACTCAAAATGCAT-TGTCACTTCTCAAGGCAGTGGAAAACTTACCAGTATTAGTCGTTG 2117
Query 2230 CTGGGGCCGAAGACGCCCTTGTGCCATTGAAGTCCTCCCAAGGAATGGCTTCTAAACTCC 2289
|||| || |||||||| ||||| || | ||||||||||||| |||||||| ||||||
Sbjct 2118 CTGGAGCAGAAGACGCACTTGTTCCCCTCAAGTCCTCCCAAGTCATGGCTTCAAAACTCG 2177
Query 2290 TTAACTCTAGACTAGTAGCAATCTCAGGATGTGGGCATTTACCACATGAGGAGTGTCCCA 2349
| |||||||| |||||||||||||||||||| || ||| ||||||| |||||||||||||
Sbjct 2178 TAAACTCTAGGCTAGTAGCAATCTCAGGATGCGGACATCTACCACACGAGGAGTGTCCCA 2237
Query 2350 AGGCGCTTCTTGCAGCCATGTCCCCGTTCATCA-CTAGACTTGTAATTAG 2398
||||||||||||||||||||||||| ||||| | | ||||||||| ||||
Sbjct 2238 AGGCGCTTCTTGCAGCCATGTCCCCATTCATTAGC-AGACTTGTACTTAG 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100482066310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5