BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15500.1
Length=2179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471751 jgi|Araly1|471751|fgenesh2_kg.1__1705__AT1G15500.1 3389 0.0
Ahg477222 jgi|Araly1|477222|fgenesh2_kg.2__2352__AT1G80300.1 2045 0.0
> Ahg471751 jgi|Araly1|471751|fgenesh2_kg.1__1705__AT1G15500.1
Length=2125
Score = 3389 bits (1835), Expect = 0.0
Identities = 2016/2103 (96%), Gaps = 13/2103 (1%)
Strand=Plus/Plus
Query 29 TCTCCTCTCTACCCAGAGCGAGTCACCTTATCGTCTCTCTATCTCCTCCTTCCTATATCC 88
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTTCTCTCTACCCAGAGAGAGTCACCTTATCGTCTCTCTATCTCCTCCCTCCTATATCC 60
Query 89 CCTTGCTCTCTGGGTTTTTGCTCAGTGTGCTACGTGAGAGATAGAGAGATGGAAGGTCTG 148
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 61 CCTTGCTCTCTGGGTTTTTGCTCAGTGT--T-CAAGAGAGATAGAGAGATGGAAGGTCTG 117
Query 149 ATTCAAACCAGAGGAATTCTCTCTTTACCCGCGAAGCCCATCGGAGTGAGAAGGCTTCTC 208
|||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||
Sbjct 118 ATTCAAACCAGAGGAATTCTCTCTTTACCCGCAAAACCCATCGGAGCGAGAAAGCTTCTT 177
Query 209 CAACCCTCACATGGCTTAAAGCAAAGACTTTTCACCACAAACTTACCTGCCTTGTCCTTA 268
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 CAACCCTCTCATGGCTTAAAGCAAAGACTTTTCACCACAAACTTACCTTCCTTGTCCTTA 237
Query 269 TCCTCTAATGGTCACAAGAAATTTCAAGCCTTTCAG-CAAATCCCACTTGGGATTTCGGT 327
||||||||||| |||| |||||||||||||||||| | |||||||| ||||||||| ||
Sbjct 238 TCCTCTAATGGGCACACCAAATTTCAAGCCTTTCAGTC-AATCCCACATGGGATTTCTGT 296
Query 328 TTCCCACAAGGAGAGAAGCAGAGGATTCATCTGCAAGGCGGAAGCTGCGGCGGCCGGAGG 387
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 TTCCCACAAGGAGAGAAGCAGAGGATTCATCTGCAAGGCGGAGGCTGCGGCGGCCGGAGA 356
Query 388 CGGAAATGTGTTCGACGAAGGAGACACAGCGGCGATGGCGGTGTCGCCTAAGATTTTCGG 447
||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||| ||
Sbjct 357 CGGAAATGTGTTCGACGGAGGAGACACGGCGGCGATTTCGGCGTCGCCTAAGATTTTTGG 416
Query 448 TGTGGAGGTTACGACTCTGAAGAAGATTGTTCCTTTAGGGCTAATGTTCTTTTGCATCCT 507
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 TGTGGAGGTTACGACTTTGAAGAAGATTGTTCCTTTAGGGCTAATGTTCTTTTGCATTCT 476
Query 508 TTTCAATTACACAATCCTTAGGGACACGAAGGATGTTTTGGTGGTGACGGCTAAAGGAAG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTCAATTACACAATCCTTAGGGACACGAAGGATGTTTTGGTGGTGACGGCTAAAGGAAG 536
Query 568 TTCTGCTGAGATTATACCCTTTTTGAAGACATGGGTGAATCTTCCGATGGCTATTGGGTT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCTGCTGAGATTATACCCTTTTTGAAGACATGGGTGAATCTTCCGATGGCTATTGGGTT 596
Query 628 TATGTTGCTATACACCAAACTTTCCAATGTTCTCTCCAAAAAGGCTCTCTTTTACACTGT 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATGTTGCTATACACCAAACTTTCCAATGTTCTCTCCAAAAAGGCTCTCTTTTACACTGT 656
Query 688 TATTGTTCCTTTCATTGTCTACTTTGGAGCCTTTGGTTTCGTGATGTACCCTCTCAGCAA 747
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATTGTCCCTTTCATTGTCTACTTTGGAGCCTTTGGTTTCGTGATGTACCCTCTCAGCAA 716
Query 748 TTTGATTCATCCTGAAGCTCTTGCTGATAAGCTTCTTGCAACACTCGGCCCCAGATTCAT 807
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTGATTCACCCTGAAGCTCTTGCTGATAAGCTTCTTGCAACACTCGGCCCCAGATTCAT 776
Query 808 GGGTCCTCTCGCAATCATGAGGATTTGGAGTTTCTGTTTGTTCTATGTCATGGCTGAGCT 867
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGGTCCTCTCGCAATCATGCGGATTTGGAGTTTCTGTTTGTTCTATGTCATGGCTGAGCT 836
Query 868 TTGGGGTAGTGTTGTCGTTTCAGTTCTCTTCTGGGGATTTGCCAACCAGATTACAACTGT 927
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 837 TTGGGGTAGTGTTGTTGTTTCAGTTCTCTTCTGGGGATTTGCAAATCAGATTACAACTGT 896
Query 928 TGACGAAGCCAAAAAGTTCTATCCTCTGTTTGGACTTGGGGCCAATGTTGCACTTATCTT 987
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 897 TGACGAAGCCAAAAAGTTCTATCCTCTGTTTGGACTAGGGGCCAATGTTGCACTTATTTT 956
Query 988 CTCAGGAAGAACTGTGAAATATTTCTCTAATATGAGAAAGAATCTTGGTCCTGGAGTTGA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTCAGGAAGAACTGTGAAATATTTCTCTAATATGAGAAAGAATCTTGGTCCTGGAGTTGA 1016
Query 1048 TGGCTGGGCTGTTTCATTAAAAGCTATGATGAGTATTGTCGTGGGGATGGGTCTCGCCAT 1107
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGCTGGGCTGTTTCATTGAAAGCCATGATGAGTATTGTCGTGGGGATGGGTCTCGCCAT 1076
Query 1108 CTGTTTCCTCTACTGGTGGGTGAATAGATATGTGCCCCTCCCAACCCGTAGCAAGAAGAA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTGTTTCCTCTACTGGTGGGTGAATAGATATGTGCCCCTCCCAACCCGTAGCAAGAAGAA 1136
Query 1168 GAAGGTGAAACCACAGATGGGAACAATGGAGAGCTTGAAGTTCTTGGTGTCATCACCATA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAAGGTGAAACCACAGATGGGAACAATGGAGAGCTTGAAGTTCTTGGTGTCATCACCATA 1196
Query 1228 CATTAGGGATCTTGCTACTTTGGTGGTTGCATATGGAATTAGTATCAACCTTGTTGAAGT 1287
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 CATTAGGGATCTTGCTACTTTGGTGGTTGCATATGGAATTAGTATCAACCTCGTTGAAGT 1256
Query 1288 CACATGGAAATCAAAGCTTAAAGCTCAGTTCCCTAGCCCGAACGAATACTCAGCATTTAT 1347
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 CACATGGAAATCAAAGCTTAAAGCTCAGTTCCCTAGCCCAAACGAATACTCAGCATTTAT 1316
Query 1348 GGGCGACTTCTCAACCTGCACAGGTATTGCAACATTCACAATGATGCTTCTAAGCCAATA 1407
||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1317 GGGTGACTTCTCGACCTGCACGGGTATAGCAACATTCACAATGATGCTTCTAAGCCAGTA 1376
Query 1408 CGTGTTTAAGAAGTATGGTTGGGGAGTAGCTGCAAAGATCACACCAACCGTTCTGCTATT 1467
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1377 CGTGTTTAAGAAGTATGGTTGGGGAGTAGCTGCAAAGATCACGCCAACCGTTCTGCTATT 1436
Query 1468 GACCGGTGTTGCCTTCTTCTCTCTGATACTGTTTGGTGGCCCATTCGCACCATTGGTTGC 1527
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1437 GACCGGCGTTGCCTTCTTCTCTCTGATACTGTTTGGTGGTCCATTCGCACCAGTGGTTGC 1496
Query 1528 CAAGCTTGGTATGACACCGCTACTCGCAGCAGTGTACGTTGGTGCCCTCCAGAATATCTT 1587
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1497 CAAGCTTGGTATGACACCGCTACTCGCAGCTGTGTATGTTGGTGCCCTCCAGAATATCTT 1556
Query 1588 CAGCAAGAGTGCCAAGTACAGCTTGTTCGATCCTTGCAAAGAAATGGCTTATATCCCATT 1647
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAGCAAGAGCGCCAAGTACAGCTTGTTCGATCCTTGCAAAGAAATGGCTTATATCCCATT 1616
Query 1648 GGATGAGGACACCAAGGTTAAAGGCAAAGCTGCAATTGATGTGGTCTGCAACCCATTGGG 1707
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GGACGAGGACACCAAGGTTAAAGGCAAAGCTGCAATTGATGTGGTCTGCAACCCATTGGG 1676
Query 1708 GAAATCAGGCGGTGCTCTAATCCAGCAGTTCATGATCCTTACATTCGGCTCACTCGCCAA 1767
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GAAATCAGGCGGTGCTTTAATCCAGCAGTTCATGATCCTTACATTCGGCTCACTCGCCAA 1736
Query 1768 TTCCACACCTTACCTTGGAGTCATCCTGCTCGGTATAGTCACTGCATGGTTAGCAGCAGC 1827
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1737 TTCCACACCTTACCTTGGAATCATCCTGCTCGGTATAGTCACTGCATGGTTAGCCGCAGC 1796
Query 1828 TAAATCGCTGGAGGGACAGTTTAACACTCTCATGTCTGAGGAAGAGCTTGAGAGGGAAAT 1887
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1797 TAAGTCGCTGGAGGGACAGTTCAACACTCTCATGTCTGAAGAAGAGCTTGAGAAGGAAAT 1856
Query 1888 GGAGAGAGCTTCATCAGTCAAGATTCCTGTTGTATCTCAGGAGGATGCGCCATCAGGAGA 1947
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1857 GGAGAGAGCTTCATCAGTCAAGATTCCTGTTGTATCTCAGGAGGATGCGCCACCAGGAGA 1916
Query 1948 AACTACGAGCCAACTATCGGAGAAATCTACTCCTACTGGCATTTAGACGATGAT-GAATA 2006
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 1917 AACTACGAGCCAACTGTCGGAGAAATCTACTCCGACTGGCATTTAGACTATGATTGAG-A 1975
Query 2007 AAAGGGTTTTGGG-ATTTGGTTACCTGT-TG-G--TTTTAATGTTTTGGTCAGGAGTAAT 2061
||||||||||||| ||| |||||| || || | |||||| ||||||||| |||||||
Sbjct 1976 AAAGGGTTTTGGGGATT-GGTTACGTGAGTGAGGGTTTTAAGGTTTTGGTCTGGAGTAAG 2034
Query 2062 ATTTTGATAGTGAGAAGACTAAAATTAATCATTTAGTTATATGtttttttGGTTGTTATT 2121
||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 2035 ATTTTGATAGTAAGAAGACTATAATTAATCATTTAGTTATATGTTTTTTTCGTTGTTGTT 2094
Query 2122 GTT 2124
|||
Sbjct 2095 GTT 2097
> Ahg477222 jgi|Araly1|477222|fgenesh2_kg.2__2352__AT1G80300.1
Length=2167
Score = 2045 bits (1107), Expect = 0.0
Identities = 1596/1830 (87%), Gaps = 41/1830 (2%)
Strand=Plus/Plus
Query 125 AGAGATAGAGAGATGGAAGGT-CTGATTCAAACCAGAGGAATTCTCTCTTTACCCGCGAA 183
||||||||||||||||||| | | ||| ||||| |||||| ||||||| |||||| | ||
Sbjct 71 AGAGATAGAGAGATGGAAGCTGC-GATACAAACGAGAGGACTTCTCTCCTTACCCACCAA 129
Query 184 GCCCATCGGAGTGAGAAGGCTTCTCCAACCCTCACATGGCTTAAAGCAAAGACTTTT--- 240
||||||||||||||||| ||||| || || || || ||||||||||| ||||||||
Sbjct 130 ACCCATCGGAGTGAGAAGCCTTCTTCAGCCTTCCCACGGCTTAAAGCAGAGACTTTTCGC 189
Query 241 CAC-CA--C-A-AACT-TACCTGCCTTGTCCT-TATCCTCTAATGGTCACAAGAAATTTC 293
||| | | | || | |||||| || | || |||||| ||| || |||||||||||||
Sbjct 190 CACGAAGCCAAGAAATCTACCTGGGTTCT-CTATATCCTTTAACGGGCACAAGAAATTTC 248
Query 294 AAGCCTTTCAGCAAATCCC-ACTTGGGATTTCGGTTTCCCACAAGGAGAGAAGCAGAGGA 352
|| ||||| ||| || ||| | ||||||||| |||||||||| |||||||||| ||
Sbjct 249 AAACCTTTGAGCCAA-CCCTTCATGGGATTTCAATTTCCCACAAAGAGAGAAGCA-CCGA 306
Query 353 -TTCATCTGCAAGGCGGAAGCTGCGGCGGCCGGAGGCGGAAATGTGTTCGACGAAGGAGA 411
||||| |||||||| || || ||||| ||||| | |||| ||| |||| |||||| ||
Sbjct 307 GTTCATATGCAAGGCCGAGGCCGCGGCCGCCGGCGACGGAGCTGTCTTCGGCGAAGGCGA 366
Query 412 CACAGCGGC-GATGGCGGTGTCGCCTAAGATTTTCGGTGTGGAGGTTACGA-CTCTGAAG 469
| || || | | | | |||||| ||||||||||||||||||||| | | || ||||
Sbjct 367 TTCCGCAGCTG-TTGTAGCGTCGCCGAAGATTTTCGGTGTGGAGGTTGCAACCT-TGAAA 424
Query 470 AAGATTGTTCCTTTAGGGCTAATGTTCTTTTGCATCCTTTTCAATTACACAATCCTTAGG 529
|||||| | |||||||| | |||||||| || || ||||||||||||||||| || |||
Sbjct 425 AAGATTATCCCTTTAGGATTGATGTTCTTCTGTATTCTTTTCAATTACACAATTCTAAGG 484
Query 530 GACACGAAGGATGTTTTGGTGGTGACGGCTAAAGGAAGTTCTGCTGAGATTATACCCTTT 589
||||| ||||| || |||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 485 GACACAAAGGACGTCTTGGTGGTGACGGCGAAAGGAAGCTCTGCTGAGATTATA-CCTTT 543
Query 590 -TTGAAGACATGGGTGAATCTTCCGATGGCTATTGGGTTTATGTTGCTATACACCAAACT 648
|||||||| |||||||||||||| ||||| |||||||||||| | || ||||| |||||
Sbjct 544 CTTGAAGACTTGGGTGAATCTTCCTATGGCCATTGGGTTTATGCTCCTCTACACTAAACT 603
Query 649 TTCCAATGTTCTCTCCAAAAAGGCTCTCTTTTACACTGTTATTGTTCCTTTCATTGTCTA 708
||||||||||||||||| |||||||| |||||||| |||||| | |||||||| |||||
Sbjct 604 CTCCAATGTTCTCTCCAAGAAGGCTCTGTTTTACACCGTTATTATCCCTTTCATCGTCTA 663
Query 709 CTTTGGAGCCTTTGGTTTCGTGATGTACCCTCTCAGCAATTTGATTCATCCTGAAGCTCT 768
|||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 664 CTTTGGGGCCTTTGGTTTCGTGATGTACCCTCTCAGCAACTACATTCATCCGGAAGCTCT 723
Query 769 TGCTGATAAGCTTCTTGCAACACTCGGCCCCAGATTCATGGGTCCTCTCGCAATCATGAG 828
|| |||||||| |||||||| |||||||| ||||||||||||||||| |||||| || |
Sbjct 724 CGCAGATAAGCTCCTTGCAACCCTCGGCCCTAGATTCATGGGTCCTCTTGCAATCTTGCG 783
Query 829 GATTTGGAGTTTCTGTTTGTTCTATGTCATGGCTGAGCTTTGGGGTAGTGTTGTCG-TTT 887
|||||||||||||||||||| ||||||||||||||||||||||||||||| || | | |
Sbjct 784 TATTTGGAGTTTCTGTTTGTTTTATGTCATGGCTGAGCTTTGGGGTAGTGTGGT-GATCT 842
Query 888 CAGTTCTCTTCTGGGGATTTGCCAACCAGATTACAACTGTTGACGAAGCCAA-AAAGTTC 946
|||||||||||||||| ||||| || ||||| |||||||| || |||||||| ||| |||
Sbjct 843 CAGTTCTCTTCTGGGGCTTTGCTAATCAGATCACAACTGTGGATGAAGCCAAGAAA-TTC 901
Query 947 TATCCTCTGTTTGGACTTGGGGCCAATGTTGCACTTATCTTCTCAGGAAGAACTGTGAAA 1006
|||||| |||| |||||||| ||||||||||| || || ||||| |||||||| ||||||
Sbjct 902 TATCCTTTGTTCGGACTTGGAGCCAATGTTGCGCTGATTTTCTCCGGAAGAACCGTGAAA 961
Query 1007 TATTTCTCTAA-TATGAGAAAGAATCTTGGTCCTGGAGTTGATGGCTGGGCTGTTTCATT 1065
|| |||||||| | |||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 962 TACTTCTCTAACT-TGAGAAAGAATCTTGGTCCTGGAGTTGACGGCTGGGCAGTTTCGTT 1020
Query 1066 AAAAGCTATGATGAGTATTGTCGTGGGGATGGGTCTCGCCATCTGTTTCCTCTACTGGTG 1125
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1021 GAAAGCCATGATGAGTATTGTCGTGGGAATGGGGCTCGCCATCTGTTTCCTCTACTGGTG 1080
Query 1126 GGTGAATAGATATGTGCCCCTCCCAACCCGTAGCAAGAAGAAGAAGGTGAAACC-ACAGA 1184
||| |||||||| || || || |||||||| |||||||||||||||| |||||| | |||
Sbjct 1081 GGTCAATAGATACGTTCCTCTTCCAACCCGCAGCAAGAAGAAGAAGGAGAAACCGA-AGA 1139
Query 1185 TGGGAACAATGGAGAGCTTGAAGTTCTTGGTGTCATCACCATACATTAGGGATCTTGCTA 1244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGGAACAATGGAAAGCTTGAAGTTCTTGGTGTCATCACCATACATTAGGGATCTTGCTA 1199
Query 1245 CTTTGGTGGTTGCATATGGAATTAGTATCAACCTTGTTGAAGTCACATGGAAATCAAAGC 1304
|||| ||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||
Sbjct 1200 CTTTAGTGGTGGCATACGGTATTAGTATCAACCTTGTGGAAGTCACTTGGAAATCAAAGC 1259
Query 1305 TTAAAGCTCAGTTCCCTAGCCCGAACGAATACTCAGCATTTATGGGCGACTTCTCAACCT 1364
||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1260 TTAAAGCTCAGTTTCCTAGTCCAAACGAGTACTCAGCATTTATGGGAGACTTCTCAACCT 1319
Query 1365 GCACAGGTATTGCAACATTCACAATGATGCTTCTAAGCCAATACGTGTTTAAGAAGTATG 1424
|||| ||||||||||||||||||||||||||||| |||||||| || || | |||||||
Sbjct 1320 GCACGGGTATTGCAACATTCACAATGATGCTTCTCAGCCAATATGTATTCGATAAGTATG 1379
Query 1425 GTTGGGGAGTAGCTGCAAAGATCACACCAACCGTTCTGCTATTGACCGGTGTTGCCTTCT 1484
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||
Sbjct 1380 GTTGGGGAGTAGCTGCAAAGATCACCCCAACTGTTCTGCTATTGACTGGTGTTGCGTTCT 1439
Query 1485 TCTCTCTGATACTGTTTGGTGGCCCATTCGCACCA-TTGGTTGCCAAGCTTGGTATGACA 1543
||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1440 TCTCTCTGATATTGTTTGGCGGCCCATTCGCACCACTTG-TTGCCAAGCTTGGTATGACA 1498
Query 1544 CCGCTACTCGCAGCAGTGTACGTTGGTGCCCTCCAGAATATCTTCAGCAAGAGTGCCAAG 1603
|||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1499 CCGCTACTCGCAGCTGTGTATGTTGGTGCCCTTCAGAATATTTTCAGCAAGAGTGCCAAG 1558
Query 1604 TACAGCTTGTTCGATCCTTGCAAAGAAATGGCTTATATCCCATTGGATGAGGACACCAAG 1663
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1559 TACAGCTTGTTCGATCCTTGCAAAGAAATGGCCTATATCCCATTGGATGAGGACACCAAG 1618
Query 1664 GTTAAAGGCAAAGCTGCAATTGATGTGGTCTGCAACCCATTGGGGAAATCAGGCGGTGCT 1723
||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |||
Sbjct 1619 GTTAAAGGCAAAGCTGCGATTGATGTGGTCTGCAACCCGTTAGGGAAATCAGGAGGAGCT 1678
Query 1724 CTAATCCAGCAGTTCATGATCCTTA-CATTCGGCTCACTCGCCAATTCCACACCTTACCT 1782
|||| ||||||||||||||| ||| |||| || ||||| || ||||| || || || ||
Sbjct 1679 TTAATACAGCAGTTCATGATC-TTATCATTTGGATCACTAGCGAATTCAACTCCGTATCT 1737
Query 1783 TGGAGTCATCCTGCTCGGTA-TAGTCACTGCATGGTTAGCAGCAGCTAAATCGCTGGAGG 1841
||| | ||| || | |||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 1738 AGGAATGATCTTGTT-GGTAATTGTCACTGCATGGTTAGCAGCAGCTAAGTCGCTGGAGG 1796
Query 1842 GACAGTTTAACA-CTCT-CATGTCTGAGGAAGAGCTTGAGAGGGAAATGGAGAGAGCTTC 1899
||||||| |||| || | | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 1797 GACAGTTCAACAGCT-TGCG-GTCTGAAGAAGAGCTTGAGAAGGAAATGGAGAGAGCTTC 1854
Query 1900 ATCAGTCAAGATTCCTGTTGTATCTCAGGA 1929
||| || ||||| ||||| || ||||||||
Sbjct 1855 ATCCGTGAAGATCCCTGTCGTGTCTCAGGA 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82008297485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5