BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15530.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920458 jgi|Araly1|920458|scaffold_101739.1 3040 0.0
> Ahg920458 jgi|Araly1|920458|scaffold_101739.1
Length=1996
Score = 3040 bits (1646), Expect = 0.0
Identities = 1855/1956 (95%), Gaps = 14/1956 (1%)
Strand=Plus/Plus
Query 23 GGCAGTGGCCATCCCCTCTCCTCCTTATCCTCATC---G-TTCTTCATCTCGTCTCTTCC 78
|||| |||||||||||||||||||||||||||||| | | |||| |||| || |||||
Sbjct 28 GGCACTGGCCATCCCCTCTCCTCCTTATCCTCATCTTTGCTGCTTC-TCTCCTCCCTTCC 86
Query 79 TCTTCCGCCATTGATTTTCTCTACAATTCCTTCAGCTCCGTAACTAACAGAACCGACGTA 138
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 87 TCTTCCGCCATTGATTTTCTCTACAATTCCTTCAGCTCTGCAACCAACAGAACCGACGTA 146
Query 139 ATCCTCATCGAAGATTCCCGCGTAGAATCCACCGTAATCAGCCTCATCAACGACTCCGAT 198
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 147 ATCCTCATCGAAGATTCCCGCGTAGACTCCACCGTGATCAGCCTCATCAACGAGTCCGAT 206
Query 199 CCACTCTCTTTCGGCCGTGTTTTTTACCCACAAAAACTCACAATTATACCCGATCCAACC 258
|| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 207 CCTTTCTCTTTCGGCCGTGTTTTTTACCCGCAAAAGCTCTCAATTATACCCGATCCAACA 266
Query 259 CGAAACCCGACCCGACTCTCATCTTTCTCAACTTCCTTCGTCTTCTCCATTCTCCCTGAC 318
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 267 CGAAACCCGACCCGACTCTCTTCTTTCTCAACTTCTTTCGTCTTCTCCATCCTCCCTGAC 326
Query 319 ATATCCACAAGTCCTGGCTTCGGCCTCTGCTTCGTCCTCTCCAATTCCACCTCTCCTCCA 378
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 327 ATATCCACAAGTCCCGGCTTTGGCCTCTGCTTCGTCCTCTCCAATTACACCTCTCCTCCA 386
Query 379 AATGCTATCTCCAGCCAATACTTCGGTCTCTTCACTAACGCCACAGTCAGATTCAACGCT 438
|| |||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 387 AACGCTATCTCAAGCCAATACTTCGGTCTCTTCACTAATGCCACCGTCCGATTCAACGCT 446
Query 439 CCTCTCCTCGCCGTCGAATTCGACACCGGTAGAAACTCTGAAGTAAACGATATCGACGAT 498
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 447 CCTCTCCTCGCCGTCGAATTCGACACCGGTCGAAACTCTGAAGTCAACGACATCGACGAT 506
Query 499 AACCACGTCGGAATTGATCTTAACAACATTGAATCCACCACATCCGTAACCGCTGGCTAC 558
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 507 AACCACATCGGAATTGACCTTAACAACATCGAATCCACCACATCCGTAACCGCTGGCTAC 566
Query 559 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTTAATATGCGTAACGGAAACAACGTTCGA 618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 567 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTCAATATGCGTAACGGAAACAACGTTCGA 626
Query 619 GCTTGGATCGATTTCGATGGCCCTAACTTTCAGATCAACGTTTCCGTCGCTCCCGTCGGT 678
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 627 GCTTGGATCGATTTCGATGGCCCTAACTTCCAGATCAACGTTTCCGTCGCTCCCGTCGGT 686
Query 679 GTGCTTCGACCTCGCCGGCCAACTCTTACTTTCCGTGATCCTGTTATTGCTAATTATGTC 738
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 687 GTGCTTCGACCTCGCCGGCCAACGCTTACTTTCCGTGATCCGGTTATCGCTAATTATGTC 746
Query 739 TCGGCAGATATGTATGCT-GGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCTCGAAG 797
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 747 TCGGCAGATATGTATG-TCGGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCGCGAAG 805
Query 798 GATTCTAGCTTGGAGCTTGAGTGATACAGGAGCTCTTCGAGAGATCAACACTACGAATTT 857
||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||
Sbjct 806 GATTCTAGCTTGGAGCTTGAGTGATACTGGAACTCTTCGAGAGATCAACACAACCAATTT 865
Query 858 ACCTGTTTTCTTCCTGGAAAACTCTTCTTCTTCTCTTTCCACTGGAGCAATCGCTGGGAT 917
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct 866 ACCTGTTTTCTTCCTGGAAAATTCTTCGTCTTCTCTTTCAACTGGAGCAATCGCCGGGAT 925
Query 918 CGTTATCGGTTGTGTTGTCTTCGTAGCTCTAATCGGATTTGGGGGTTATTTGATTTGGAA 977
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 926 CGTTATCGGTTGTGTTGTCTTCGTAGGTCTACTTGGATTTGGGGGTTATTTGATTTGGAG 985
Query 978 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1045
Query 1038 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGTTTTCTCTAACGATCGTCT 1097
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1046 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGGTTTCTCTAACGATCGTCT 1105
Query 1098 GCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1165
Query 1158 TGCTGTTAAATGCGTGAATCACGATTCGAAGCAAGGTTTGAGAGAATTTATGGCGGAGAT 1217
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1166 AGCTGTTAAATGCGTGAACCATGATTCGAAGCAAGGTTTGAGAGAATTCATGGCGGAGAT 1225
Query 1218 CTCGAGTATGGGTAGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1277
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CTCGAGTATGGGTCGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1285
Query 1278 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1345
Query 1338 CTTTGATAATCCTAAAGAGCCAATGCCGTGGAGGAGAAGGCGTCAGGTGATTAACGATGT 1397
|||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1346 TTTTGATAACCCTAAAGAGCCAATGCCGTGGCGGAGGAGGCGTCAGGTGATTAGCGATGT 1405
Query 1398 TGCGGAAGGGCTTAATTATCTCCACCATGGATGGGATCAAGTGGTGATTCATAGAGATAT 1457
||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1406 TGCGGAAGGGCTTAACTATCTACACCATGGATGGGACCAAGTGGTGATTCACAGAGATAT 1465
Query 1458 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGGCTTGGGGACTTCGGTTT 1517
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1466 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGACTTGGGGACTTTGGTTT 1525
Query 1518 AGCTAAGTTATATGAGCACGGTGGGGCTCCAAACACGACTCGCGTGGTGGGCACGTTAGG 1577
||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1526 AGCCAAGCTGTATGAGCACGGTGGGGCTCCAAACACGACACGCGTGGTGGGCACGTTAGG 1585
Query 1578 GTATTTGGCTCCGGAGCTTGCGTCTGCTTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1637
||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1586 GTATTTGGCACCGGAGCTTGCGTTTGCGTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1645
Query 1638 TTTTGGTGTGGTGGTGTTGGAGGTTGTTAGTGGGAGGAGACCGATAGAGTACGCGGAGGA 1697
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1646 TTTTGGTGTGGTGGTGTTGGAGGTTGTTTGTGGGAGGAGGCCGATAGAGTACGCGGAGGA 1705
Query 1698 GGAAGATATGGTGCTTGTGGATTGGGTTAGGGATTTGTACGGTGGAGGAAGAGTGGTTGA 1757
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1706 GGAAGATATGGTACTTGTGGATTGGGTTAGGGATTTGTACGGCGGAGGAAGAGCGGTTGA 1765
Query 1758 TGCAGCGGACGAGAGAGTAAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1817
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 TGCGGCGGACGAGAGAGTGAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1825
Query 1818 CAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 GAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1885
Query 1878 CGTTTCACTACT-GCTTGGCTCACCACAAGAGGATTTGTTGACTGGG-CTCACGCCGGCC 1935
||| ||||| || |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1886 CGTCTCACT-CTTGCTTGGCTCACCACAAGAGGATTTGTTGAC-GGGACTCACGCCGGCA 1943
Query 1936 GCCGCCGCGGCAGACTCCACGGCTGCTCACGCATGA 1971
|||||||| |||||| ||||||||||||||||||
Sbjct 1944 GCCGCCGC---AGACTCTACGGCTGCTCACGCATGA 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5