BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15540.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911360 jgi|Araly1|911360|Al_scaffold_0001_1614 1441 0.0
> Ahg911360 jgi|Araly1|911360|Al_scaffold_0001_1614
Length=969
Score = 1441 bits (780), Expect = 0.0
Identities = 906/966 (94%), Gaps = 12/966 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGGGAATGAAACTAGAGAGCTTCCGATCATCAACCTCTCTGACAAGAACCTAAAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGTGGGAATGAAACTAGAGAGCTTCCGATCATCAACCTTTCTGACAAGAACCTAAAA 60
Query 61 CAGAACACAGAGCTTTGGAGCTTC-ACGAGAGACAGCGTCCGTGAAGCCATGGAACACCA 119
||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||
Sbjct 61 CAGAACACAGAGCTTTGGAAC-TCGACGAGAGACAGCGTCCGTAAAGCCATGGAACACCA 119
Query 120 TGGATGGTTTGTGGCCGAGTACAACAACTTTCCAACAGG-ACTTCACCAGTCGATTTTGG 178
||||||||||||||| ||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 120 TGGATGGTTTGTGGCTGAGTACAACAACTTTCCCAC-GGAACTTCACCACTCGATTTTGG 178
Query 179 AGGCCGCTAAGGAACTACTCGATCTTCCTGTCGAAATCAAGCTAAAGAACGAGAACCACA 238
||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 179 AGGCCGCTAAGGAACTACTCGATCTTCCTCCCGAAATCAAGATAAAGAACGAGAGCCACA 238
Query 239 AGGCC-GGACACGGCTACATCACCATGATGTCAGATGGCCAGCCTGTTCATGAAGGTCTT 297
||||| || |||||||||||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct 239 AGGCCAGG-CACGGCTACATCACCATGATCTCCGATGGTCAGCCCGTTCACGAAGGTCTT 297
Query 298 GGTATTGATCAAGTCAACGATGTTCAACAGTGCCGCGGATTCTCTCGTCTCATGTGGCCT 357
|||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||| ||
Sbjct 298 GGTATTGACCAAGTCAACGATGTCCAACAGTGCCGCCGATTCACTCGTCTCATGTGGTCT 357
Query 358 GATGATCATGATGATAACGACCGTTTCTGTGAAACTGTTCATGCATATGCGAAAATGCAA 417
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGATCATCATGACAACGACCGTTTCTGTGAAACTGTTCATGCATATGCGAAAATGCAA 417
Query 418 GCGGAACTAGAGCAACTTGTGATAAGGATGCTATTCGAGAGCTATAACGTGGAGAAGTAT 477
|| ||||| |||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct 418 GCAGAACTGGAGCAACTGGTAATAAGGATGCTCTTCGAGAGCTATAACGTGGAGAAGCAT 477
Query 478 ACAGAGAAATACATAGGAGGAACAAGGTACCTTCTTCGACTGCTGAAATACAGGAGACTT 537
|||| |||||||| |||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 478 GCAGATAAATACATTGGAGGAACAAGGTACCTTCTTCGATTGATGAAATACAAGAGACTC 537
Query 538 CCTAATGGAGAACCCAACAGGAAATTCATTTCTCATACGGACAAGAGCTTCATCTCCATT 597
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 538 CCTAATGGAGAACCCAACAGGAAGTTTATTTCTCATACCGACAAGAGCTTCATCTCCATT 597
Query 598 CTCCATCAGAACCACATCACCGGACTCATGTTGAAATCCGAGAAAGAGGATGTTTGGTAT 657
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCCATCAGAACCATATCACAGGACTCATGTTGAAATCCGAGAAAGAGGATGTTTGGTAT 657
Query 658 CATTTTACTCCTTCACCAACTCGGTTTGTTGTTATAGCAGGCGATGCCATCATGGCGTGG 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCTTTTACTCCTTCACCAACTCGGTTTGTTGTTATAGCAGGCGATGCCATCATGGCGTGG 717
Query 718 AGCAACGACAGAATCAAGGCGTGTTACCACAAGGTGGAGATGGAGAGCGTGGAAATGAGG 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 AGCAACGACAGAATCAAGGCGTGTTACCACAAGGTGGAGATGGAAAGCGTGGAAATGAGG 777
Query 778 TACTCGTTAGGGTTCTTTTCGTTCCAAGAAGGGATGATATCGACACCGGAAGAGATGGTG 837
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct 778 TACTCGTTAGGGTTCTTTTCGTTCCAAAAAGGGGTGATATCGACACCGGAAGAAATGGTG 837
Query 838 GACAAGGACCATCCTTTAGCGTACAA-CCCATTTCACCATGACGGACTTCTTGAGTACTA 896
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 838 GACAAGGACCATCCTTTAGCGTACAAGCCC-TTTCACCATGATGGACTTCTTGAGTACTA 896
Query 897 TGAAACATTGG-AGGTTCATCTCAAGGCTCACCGTACCATGACCAAGGC-TTATTGTGGC 954
||||||||||| || | |||||||||||||| ||||||||||||||||| || |||||||
Sbjct 897 TGAAACATTGGGAGCT-CATCTCAAGGCTCATCGTACCATGACCAAGGCCTT-TTGTGGC 954
Query 955 ATCCCA 960
||||||
Sbjct 955 ATCCCA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5