BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15550.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471756 jgi|Araly1|471756|fgenesh2_kg.1__1710__AT1G15550.1 1857 0.0
> Ahg471756 jgi|Araly1|471756|fgenesh2_kg.1__1710__AT1G15550.1
Length=1240
Score = 1857 bits (1005), Expect = 0.0
Identities = 1169/1247 (94%), Gaps = 15/1247 (1%)
Strand=Plus/Plus
Query 1 ATCACCAAACACCACACTTCTCATAAGaaaaaaaacacaaacatctatcaaatttacaaa 60
||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1 ATCACCAAACATCACACTTCTCATAAG-AAAAATACACAAACATCTATCAGATTTATAAA 59
Query 61 gttttaaaactaattaaaaaaGAGCAAGATGCCTGCTATGTTAACAGATGTGTTTAGAGG 120
|||| ||| || || | |||||||||||||| |||||||||||||||||||||||
Sbjct 60 -TTTTTAAA--AA--CAAGATCAGCAAGATGCCTGCAATGTTAACAGATGTGTTTAGAGG 114
Query 121 CCATCCCATTCACCTCCCACACTCTCA-CATACCTGACTTCACATCTCTCCGGGAGCTCC 179
|||||||||||||||||||||||||| || |||||||||||| || || || |||||||
Sbjct 115 GCATCCCATTCACCTCCCACACTCTCACCA-ACCTGACTTCACTTCCCTTCGTGAGCTCC 173
Query 180 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCTCCGCTGCTCCTTCTCCTC 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 174 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCGCCGCTGCTCCTTCTCCTC 233
Query 240 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTCGACCACCCGGACGCGACTAACCAAA 299
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 234 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTGGACCACCCGGACGCGGCCAACCAAA 293
Query 300 TCGGTCATGCATGTAGAACTTGGGGTGCCTTCCAAATCTCAAACCACGGCGTGCCTTTGG 359
|||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 294 TCGGCCATGCATGTAGAACTTGGGGTGCCTTCCAGATCGCAAACCACGGCGTGCCTTTGG 353
Query 360 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGTCTCTTCGGGCTACCTGTCCAACGCA 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 354 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGCCTCTTCGGGCTACCTGTCCAACGCA 413
Query 420 AGCTTAAGTCTGCTCGGTCGGAGACAGGTGTGTCCGGCTACGGCGTCGCTCGTATCGCAT 479
|||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 414 AGCTTAAGGCGGCTCGGTCGGAGACAGGTGTCTCCGGTTATGGCGTCGCTCGTATCGCGT 473
Query 480 CTTTCTTCAATAAGCAAATGTGGTCCGAAGGTTTCACCATCACTGGCTCGCCTCTCAACG 539
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 474 CTTTCTTCAATAAGAAAATGTGGTCCGAAGGTTTCACCATCACTGGTTCCCCTCTCAACG 533
Query 540 ATTTCCGTAAACTTTGGCCCCAACATCACCTCAACTACTGCGATATCGTTGAAGAGTACG 599
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 534 ATTTCCGTAAACTTTGGCCCCAACTTCACCTCAACTACTGCGACATCGTTGAAGAGTACG 593
Query 600 AGGAACATATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAATTCACTTGGGG 659
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 594 AGGAACAAATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAAATCACTTGGGG 653
Query 660 TCAGCGAAGAAGACATTGAATGGGCCAGTCTCAGTTCAGATTTAAACTGGGCCCAAGCTG 719
|||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 654 TCAGCGAAGAGGACGTTGAATGGGCCAGTCTCAATTCAGATTTAAATTGGGCCCAAGCTG 713
Query 720 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCCATGGGTCTAGCAG 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 714 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCTATGGGTCTAGCAG 773
Query 780 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGTCTACAAG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 774 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGCCTACAAG 833
Query 840 TATTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGTTTCCTGGCTCGCTCGTGGTTA 899
| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 834 TGTTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGGTTCCTGGCTCGCTAGTGGTCA 893
Query 900 ACGTTGGTGACCTCTTCCACATCCTATCCAATGGATTGTTTAAAAGCGTGTTGCACCGCG 959
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 894 ACGTTGGTGACCTCTTCCACATCTTATCCAACGGATTGTTTAAAAGCGTGCTGCACCGCG 953
Query 960 CTCGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCGCAATCTG 1019
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 CTAGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCACAATCTG 1013
Query 1020 ATATCAAGATATCACCTGTACCGAAGCTGGTTAGTCCCGTTGAATCGCCTCTATACCAAT 1079
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1014 ATATCAAGATATCACCCGTACCGAAGCTGGTTAGTCCGGTTGAATTGCCTCTATACCAAT 1073
Query 1080 CGGTGACATGGAAAGAGTATCTTCGAACAAAAGCAACTCACTTCAACAAAGCTCTTTCAA 1139
|||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1074 CGGTCACATGGACAGAGTATCTTCGAACAAAAGCAACTCACTTCAATAAAGCTCTTTCAA 1133
Query 1140 TGATTAGAAATCACAGAGAAGAATGATTA-----GA--TAATAATAGTTGTGATCTACTA 1192
||||||||||||||||||| ||||||||| || |||||||| |||||||| |||
Sbjct 1134 TGATTAGAAATCACAGAGAGGAATGATTAATCATGAGATAATAATATTTGTGATCCGCTA 1193
Query 1193 GTTAGTTTGATTAATAAATTGTTGTAAATGATTTCAGCAATATGATT 1239
||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1194 GTTAGTTTGATTAATAAATTGTTGTTAATTATTTCAGCAATATGATT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5