BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15570.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471757 jgi|Araly1|471757|fgenesh2_kg.1__1711__AT1G15570.1 2848 0.0
Ahg316923 jgi|Araly1|316923|fgenesh1_pm.C_scaffold_2001956 837 0.0
> Ahg471757 jgi|Araly1|471757|fgenesh2_kg.1__1711__AT1G15570.1
Length=1849
Score = 2848 bits (1542), Expect = 0.0
Identities = 1759/1861 (95%), Gaps = 25/1861 (1%)
Strand=Plus/Plus
Query 1 GTGTCTCCTTCACTTTCAAAGACAGTCTCTTTCCCCAAAGAGCGGATTCAGGATTCACCA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTGTCCTTCACTTTCAAAGACAGTCTCTTTCCCCAAAGAGCGGATTCAGGATTCACCA 60
Query 61 TCTCGATCTGTGTCCAAAGCTCCTATCTTTCTTCTTTCTTCCCTGAAGAATTTTCTGGAG 120
||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||
Sbjct 61 TCTCGATCTGTGTCCAAAGCTCCCATCTTTCTTC--T-TTCCCTGAAGAATTTACTGGAG 117
Query 121 CTTCTCAGATCAGAGGAAGATGATGCAATCCTAAGACTCTAAGAC-TTCTTCAAGGCTGT 179
|||| ||| ||||| |||||| ||||||||||||||||||||||| || ||| ||||||
Sbjct 118 CTTCACAGGTCAGATGAAGATTATGCAATCCTAAGACTCTAAGACGTT-TTCGGGGCTGT 176
Query 180 GTTTTATCGTGGGATTTTTAAACATGGGGAAGGAAAATGCTGTGTCTCGGCCATTCACTC 239
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTTTTCTCGTGGGA-TTTTAAACATGGGGAAGGAAAATGCTGTGTCTCGGCCATTCACTC 235
Query 240 GTTCCCTTGCCTCTGCTTTGCGCGCTTCAGAAGTGACTTCTACTACACAGAATCAACAGA 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 236 GTTCCCTTGCCTCTGCTTTGCGCGCTTCAGAAGTGACTTCTACCACACAGAATCAACAGA 295
Query 300 GAGTAAACACAAAAAGACCAGCCTTGGAGGATACAAGAGCCACTGGACCCAACAAGAGGA 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 GAGTAAACACAAAAAGACCAGCCTTGGAGGATACAAGAGCCACTGGACCGAACAAGAGGA 355
Query 360 AGAAGCGAGCGGTTCTAGGGGAGATCACAAATGTTAACTCCAAT--A-CAGCTATACTTG 416
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 356 AGAAGCGAGCGGTTCTAGGGGAGATCACAAATGTTAACTCCAATGCATCAGCTATACTTG 415
Query 417 AGGCCAAAAACAGCAAGCAGATAAAGAAAGGACGCGGTCATGGATTGGCGAGTACATCCC 476
|||||||||||| ||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 416 AGGCCAAAAACATCAAGCAGATAAAGAAAGGACGGGGACAGGGATTGGCGAGTACATCCC 475
Query 477 AGTTGGCAACTTCTGTTACTTCAGAAGTCACAGATCTTCAGTCCAGGACCGATGCAAAAG 536
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 AGTTGGCATCTTCTGTTACTTCAGAAGTCACAGATCTTCAGTCCAGGACTGATGCAAAAG 535
Query 537 TTGAAGTTGCATCAAATACAGCAGGAAACCTTTCTGTTTCTAAAGGCACAGATAACACAG 596
| ||||||| ||||||||||||||||||||| ||||||| ||||||||| | || |||
Sbjct 536 TAGAAGTTGTATCAAATACAGCAGGAAACCTGTCTGTTTGTAAAGGCAC--A-AATGCAG 592
Query 597 CTGATAACTGTATTGAGATATGGAA-TTCTAGATTGCCTCCAAGACCTCTTGGGAGATCA 655
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 593 CTGATAACTGTATTGAGAAATGGAATTTC-AGATTGCCTCCAAGACCTCTTGGGAGATCA 651
Query 656 GCTTCTACAGCTGAGAAAAGTGCTGTTATTGGTAGTTCAACTGTACCGGATATCCCAAAA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 652 GCTTCTACAGCTGAGAAAAGTGCTGTTATTGGTAGTTCAACTGTACCGGATATCCCGAAA 711
Query 716 TTTGTAGACATCGATTCAGATGACAAGGATCCTTTACTGTGCTGCCTCTATGCCCCTGAA 775
|| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 712 TTCGTAGACATTGATTCAGATGACAAGGATCCTCTACTGTGCTGCCTCTATGCCCCTGAA 771
Query 776 ATCCACTACAATTTGCGTGTTTCAGAGCTTAAACGCAGACCACTTCCGGACTTTATGGAG 835
||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||
Sbjct 772 ATCTACTACAATTTGCGTGTTTCGGAGTTTAAACGCAGACCAGTTCCCGACTTTATGGAG 831
Query 836 AGAATACAGAAGGATGTCACCCAGTCCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAG 895
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 832 AGAATACAGAAGGATGTCACCCAGTCCATGCGGGGGATTCTGGTTGATTGGCTTGTAGAG 891
Query 896 GTCTCTGAAGAATACACACTTGCATCTGACACTCTCTACCTCACAGTGTATCTCATAGAC 955
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 892 GTCTCTGAAGAATACACACTTGCATCTGACACCCTCTACCTCACAGTGTATCTCATAGAC 951
Query 956 TGGTTCCTCCATGGAAACTACGTGCAAAGACAGCAACTTCAACTGCTCGGCATCACTTGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGTTCCTCCATGGAAACTACGTGCAAAGACAGCAACTTCAACTGCTCGGCATCACTTGC 1011
Query 1016 ATGCTAATTGCCTCGAAGTATGAGGAAATCTCTGCTCCACGCATTGAGGAGTTTTGCTTC 1075
||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1012 ATGCTAATTGCCTCGAAATATGAGGAAATCTGTGCGCCACGCATTGAGGAGTTTTGCTTC 1071
Query 1076 ATTACGGATAACACCTACACAAGAGATCAGGTCCTGGAAATGGAGAACCAAGTACTTAAG 1135
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1072 ATTACGGATAACACCTACACAAGAGATCAGGTCTTGGAAATGGAGAACCAAGTACTTCAG 1131
Query 1136 CATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTTAGGAGATTTCTCAGA 1195
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1132 CATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTCAGGAGATTTCTTAGA 1191
Query 1196 GCAGCTCAAGCCTCTCGCCTGAGCCCAAGCCTTGAAGTCGAGTTTCTAGCCAGCTATCTA 1255
||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 GCAGCACACGCCTCTCACCTGAGCCCGAGCCTTGAAGTCGAGTTTCTAGCCAGCTATCTA 1251
Query 1256 ACAGAGTTGACATTAATAGACTACCATTTCTTAAAGTTTCTTCCTTCCGTTGTTGCTGCT 1315
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1252 ACAGAGTTGACATTAATAGACTATCAATTCTTGAAGTTTCTTCCTTCCGTTGTTGCTGCT 1311
Query 1316 TCAGCGGTTTTTCTCGCCAAGTGGACAATGGACCAATCAAACCACCCATGGAATCCAACA 1375
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TCAGCAGTTTTTCTTGCCAAGTGGACAATGGACCAATCAAACCACCCATGGAATCCAACA 1371
Query 1376 CTTGAGCATTACACAACGTACAAAGCATCGGATCTGAAAGCATCTGTTCATGCCTTACAA 1435
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1372 CTTGAGCATTACACAACGTACAAAGCATCAGATCTGAAAGCATCTGTCCATGCCTTACAA 1431
Query 1436 GATCTGCAGCTTAACACCAAAGGTTGCCCCTTGAGCGCTATACGCATGAAGTATAGGCAA 1495
||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1432 GATCTTCAGCTTAACACCAAAGGTTGCCCTTTAACCGCTATACGCATGAAGTATAGGCAA 1491
Query 1496 GAGAAATACAAATCTGTGGCGGTTCTCACGTCTCCAAAGCTACTTGACACGCTATTCTGA 1555
||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1492 GAGAAATTCAAATCTGTGGCGGTTCTCACATCTCCCAAGCTACTTGACACGCTATTCTAA 1551
Query 1556 AGGTTTCAACTCCTAACCGATAATAGTTTTGTCACATTGATGGTCCAATTTCGTTTTCAT 1615
|||||||||||||||||| |||||||||||||| ||||||||||||| || ||| |||||
Sbjct 1552 AGGTTTCAACTCCTAACCAATAATAGTTTTGTCGCATTGATGGTCCAGTT-CGTCTTCAT 1610
Query 1616 TCATCTGTTACTCTTTGTTCATAAAACAGAATTTCC-ACAGTCCCACTCATCTAATACCT 1674
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1611 TCATCTGTTACTCTTTGTTCATAAAACAGAATTCCCCACAGTCCCACTCATCTAATACCT 1670
Query 1675 GATTAGAATTCGGTTTAGCCTAGTTTGATCCGTGGTTTGGTTCTTCCAAACCCGGGA-AC 1733
||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||
Sbjct 1671 GATTAGAATTCGGTTTAGCCTAGTTCGATCCGCCGTTTGGTTCTTCCAAACTCGG-ACAC 1729
Query 1734 ATCTAATCGGTACCTAGAGttt-tttttATTGTAACGAGAATGTACATT---TTT--CTC 1787
|||||||||||| | |||| || |||||||||||||||||||||||||| ||| |||
Sbjct 1730 ATCTAATCGGTAACAAGAGGTTATTTTTATTGTAACGAGAATGTACATTACATTTTTCTC 1789
Query 1788 CCATCTTGAGGCAATGTAAACAGATTCGGAATTTTCATATCAGTTTTCTGATATGAAGTA 1847
|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct 1790 CCATCTTGAGGCAATGTAAACAGATTCGGAATTT-CATATCATTTTTATGATATGAAGTA 1848
Query 1848 G 1848
|
Sbjct 1849 G 1849
> Ahg316923 jgi|Araly1|316923|fgenesh1_pm.C_scaffold_2001956
Length=1380
Score = 837 bits (453), Expect = 0.0
Identities = 695/814 (85%), Gaps = 8/814 (1%)
Strand=Plus/Plus
Query 709 CCCAAAATTTGTAGACATCGATTCAGATGACAAGGATCCTTTACTGTGCT-GCCTCTATG 767
||| ||||| || ||||| |||||||||||||| || ||| | || || | |||| ||||
Sbjct 528 CCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTCTG-TAGCCTTTATG 586
Query 768 CCCCTGAAATCCACTACAATTTGCGTGTTTCAGAGCTTAAACGCAGACCACTTCCGGACT 827
| ||||| ||| ||||||| |||||||| | ||||| || ||||||||| |||| || |
Sbjct 587 CACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGACCATTTCCTGATT 646
Query 828 TTATGGAGAGAATACAGAAG-GATGTCACCCAGTCCATGCGGGGAATTCTGGTTGATTGG 886
|||||||||||| ||| ||| ||||| || || | |||||||||||||| |||||||||
Sbjct 647 TTATGGAGAGAACACA-AAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGG 705
Query 887 CTTGTGGAGGTCTCTGAAGAATACACACTTGCATCTGACACTCTCTACCTCACAGTGTAT 946
||||| |||||||| || ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 706 CTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTACCTCACAGTGTAT 765
Query 947 CTCATAGACTGGTTCCTCCATGGAAACTACGTGCAAAGACAGCA-ACTTCAACTGCTCGG 1005
|||||||||||||| |||||||||||||||||| |||||||| | ||||||| |||| ||
Sbjct 766 CTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAG-AGACTTCAATTGCTTGG 824
Query 1006 CATCACTTGCATGCTAATTGCCTCGAAGTATGAGGAAATCTCTGCTCCACGCATTGAGGA 1065
||||||||| ||||| ||||| ||||| |||||||||||| ||| ||||| ||||||||
Sbjct 825 CATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCACGAATTGAGGA 884
Query 1066 GTTTTGCTTCATTACGGATAACACCTACACAAGAGATCAGGTCCTGGAAATGGAGAACCA 1125
||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 885 GTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAAATGGAGAGCCA 944
Query 1126 AGTACTTAAGCATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTTAGGAG 1185
|||| | |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||
Sbjct 945 AGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACATTCCTCAGGAG 1004
Query 1186 ATTTCT-CAGAGCAGCTCAAGCCTCTCGCCTGAGCCCAAGCCTTGAAGTCGAGTTTCTAG 1244
|||||| | |||||||||||| ||| || || ||||| || ||| | ||||| || |
Sbjct 1005 ATTTCTTC-GAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATGGAGTTCCTGG 1063
Query 1245 CCAGCTATCTAACAGAGTTGACATTAATAGACTACCATTTCTTAAAGTTTCTTCCTTCCG 1304
| | || ||||| || ||||| ||||| ||||||| |||||| ||||| || ||||| |
Sbjct 1064 CGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTGCCTTCGG 1123
Query 1305 TTGTTGCTGCTTCAGCGGTTTTTCTCGCCAAGTGGACAATGGACCAATCAAACCACCCAT 1364
| | |||||||| || |||||||| |||||||||||| || ||||||||| |||||| |
Sbjct 1124 TCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCAAGCCACCCTT 1183
Query 1365 GGAATCCAACACTTGAGCATTACACAACGTACAAAGCATCGGATCTGAAAGCATCTGTTC 1424
|||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 1184 GGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTCC 1243
Query 1425 ATGCCTTACAAGATCTGCAGCTTAACACCAAAGGTTGCCCCTTGAGCGCTATACGCATGA 1484
| || || |||||||| ||||||||||||||||| || ||||||| | ||||||||||||
Sbjct 1244 ACGCTTTGCAAGATCTTCAGCTTAACACCAAAGGATGTCCCTTGAACTCTATACGCATGA 1303
Query 1485 AGTATAGGCAAGAGAAATACAAATCTGTGGCGGT 1518
||||||| || || || | |||||| ||||||||
Sbjct 1304 AGTATAGACAGGACAAGTTCAAATCCGTGGCGGT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5