BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15580.1 Length=628 Score E Sequences producing significant alignments: (Bits) Value Ahg471758 jgi|Araly1|471758|fgenesh2_kg.1__1712__AT1G15580.1 867 0.0 > Ahg471758 jgi|Araly1|471758|fgenesh2_kg.1__1712__AT1G15580.1 Length=594 Score = 867 bits (469), Expect = 0.0 Identities = 553/593 (93%), Gaps = 8/593 (1%) Strand=Plus/Plus Query 1 ACATTAACACCAATACTTTCAATCAAAAACATCAAAGATGGCGAATGAGAGTAATAATCT 60 ||||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||| Sbjct 1 ACATTAACACCAATACTTTCAATTAAAAACATC-AATATGGCGAATGAGAGTGATAATCT 59 Query 61 TGGACTCGAAATCACCGAACTACGGCTAGGTCTTCCCGGAG--AT-ATCGTCGTCTCCGG 117 |||||| |||||||| |||||| |||||||||||||||||| || |||||||||||||| Sbjct 60 TGGACTTGAAATCACTGAACTAAGGCTAGGTCTTCCCGGAGATATCATCGTCGTCTCCGG 119 Query 118 TGAGTCCATCTCCGGGAAGAAGAGGGCTTCTCCGGAAGTAGAGATTGATTTGAAATGTGA 177 | |||| |||| |||||||||||||| ||||||||||| |||| | | |||||||||| Sbjct 120 TCAGTCTATCTTGGGGAAGAAGAGGGCCTCTCCGGAAGTGGAGAGTAACATGAAATGTGA 179 Query 178 ACCGGCGAAAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 237 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACCGGCGACAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 239 Query 238 CAGTCTCGAACGGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 297 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CAGTCTTGAACAGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 299 Query 298 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTTGCTTCCGCTCTGCAAAT 357 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 300 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTCGCTTCCGCTCTACAAAT 359 Query 358 TCTGTTCGGATGCTATATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 417 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCTGTTCGGATGCTCTATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 419 Query 418 ATATGAAGACAAAGATGGAGATTGGATGCTTGCTGGAGATGTTCCTTGGGAAATGTTCCT 477 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || Sbjct 420 ATATGAAGACAAAGATGGAGATTGGATGCTTGCGGGAGACGTTCCTTGGGAGATGTTTCT 479 Query 478 TGGATCGTGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGATATT 537 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 TGGATCATGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGATTTT 539 Query 538 T--A-TAGTCACATGTGAATGTGAGTGAGCCTTACAGATATCTAAATATACAT 587 | | |||||||||| | || |||||||||||| |||||||||||||||||| Sbjct 540 TTTAATAGTCACATGCGTATCTGAGTGAGCCTTG-AGATATCTAAATATACAT 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22988118951 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5