BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15580.1
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471758 jgi|Araly1|471758|fgenesh2_kg.1__1712__AT1G15580.1 867 0.0
> Ahg471758 jgi|Araly1|471758|fgenesh2_kg.1__1712__AT1G15580.1
Length=594
Score = 867 bits (469), Expect = 0.0
Identities = 553/593 (93%), Gaps = 8/593 (1%)
Strand=Plus/Plus
Query 1 ACATTAACACCAATACTTTCAATCAAAAACATCAAAGATGGCGAATGAGAGTAATAATCT 60
||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||
Sbjct 1 ACATTAACACCAATACTTTCAATTAAAAACATC-AATATGGCGAATGAGAGTGATAATCT 59
Query 61 TGGACTCGAAATCACCGAACTACGGCTAGGTCTTCCCGGAG--AT-ATCGTCGTCTCCGG 117
|||||| |||||||| |||||| |||||||||||||||||| || ||||||||||||||
Sbjct 60 TGGACTTGAAATCACTGAACTAAGGCTAGGTCTTCCCGGAGATATCATCGTCGTCTCCGG 119
Query 118 TGAGTCCATCTCCGGGAAGAAGAGGGCTTCTCCGGAAGTAGAGATTGATTTGAAATGTGA 177
| |||| |||| |||||||||||||| ||||||||||| |||| | | ||||||||||
Sbjct 120 TCAGTCTATCTTGGGGAAGAAGAGGGCCTCTCCGGAAGTGGAGAGTAACATGAAATGTGA 179
Query 178 ACCGGCGAAAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCGGCGACAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 239
Query 238 CAGTCTCGAACGGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 297
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGTCTTGAACAGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 299
Query 298 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTTGCTTCCGCTCTGCAAAT 357
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 300 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTCGCTTCCGCTCTACAAAT 359
Query 358 TCTGTTCGGATGCTATATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTGTTCGGATGCTCTATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 419
Query 418 ATATGAAGACAAAGATGGAGATTGGATGCTTGCTGGAGATGTTCCTTGGGAAATGTTCCT 477
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 420 ATATGAAGACAAAGATGGAGATTGGATGCTTGCGGGAGACGTTCCTTGGGAGATGTTTCT 479
Query 478 TGGATCGTGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGATATT 537
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGGATCATGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGATTTT 539
Query 538 T--A-TAGTCACATGTGAATGTGAGTGAGCCTTACAGATATCTAAATATACAT 587
| | |||||||||| | || |||||||||||| ||||||||||||||||||
Sbjct 540 TTTAATAGTCACATGCGTATCTGAGTGAGCCTTG-AGATATCTAAATATACAT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22988118951
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5