BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15590.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334843 jgi|Araly1|334843|fgenesh1_pg.C_scaffold_1001408 710 0.0
> Ahg334843 jgi|Araly1|334843|fgenesh1_pg.C_scaffold_1001408
Length=777
Score = 710 bits (384), Expect = 0.0
Identities = 477/522 (91%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 1 ATGGACAGCGAATCCCACAGTGATAATGATGATCACATAATCGACATTACAAACGATGAA 60
||||| ||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 1 ATGGAGAGCGAATCCGACAATGATAATGATGAGCACATTATCGAAATTACAAACGACGAC 60
Query 61 GATTCTTCATCAAGATCGTCTTTGGACGAGAGAAGCTATC-CTTCATTAAGTTCGTCTCT 119
| ||||| ||| ||||||||||||||||||||||||| | |||||||||| |||||| |
Sbjct 61 GGTTCTTTATCGGGATCGTCTTTGGACGAGAGAAGCTA-CTCTTCATTAAGCTCGTCTGT 119
Query 120 GTCTACGGATGACGAATCGTCAGATGAAGGTGCAAGTTCATCTACGAGAGACTGTGGTAG 179
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GTCTACGGATGACGAAACGTCAGATGAAGGTGCAAGTTCATCTACGAGAGGCTGTGGTAG 179
Query 180 TCTTTGGAATATAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCATTAATAGT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 180 TCTTTGGAATACAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCGTTAGTAGT 239
Query 240 TTTAACTCTGGCAAAAGATGAACATCAACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTTGACTGTGGCAAAAGATGAACATCTACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299
Query 300 CACTTGTGGCTGTATTACCATTACGCTCCTTATTCTCCTCTCGTGTGTCCGCAAATACAA 359
|||||||||||||||| ||| ||||||| || ||||||| ||||||||||||||||| ||
Sbjct 300 CACTTGTGGCTGTATTGCCAATACGCTCGTTCTTCTCCTTTCGTGTGTCCGCAAATATAA 359
Query 360 CCGAATTGGTGTTTACTCAAAAACGAGAACGGATAGGGTAATGGATGCTTTGAAGATGGG 419
||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 360 CCGAATTGGGGTTTACTCAAGGACGAGAATTGATGGGGTAATGGATGCTTTGAAGATGGG 419
Query 420 GAAT-GAATGTTTCTTTGTTGTGTGGTTAGTTATGGGGAT-TCTATGGATTTGTTATGGA 477
||| ||||||||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 420 -AATTGAATGTTTCTTTGTTGTGTGGTTAGTTTTGGGGATAT-TATGGATTTGTTATGGA 477
Query 478 CACTCATCTTCTTCTGATACTCCTAAGCTCTACAGATTCTGT 519
||||||||| |||||||| |||||||||||||||| || |||
Sbjct 478 CACTCATCTCCTTCTGATGCTCCTAAGCTCTACAGGTTATGT 519
Score = 279 bits (151), Expect = 2e-74
Identities = 183/199 (92%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 522 GGGAAGGTATAGGAGGTAGATTTGTTTTCAAGAAACCGAGCCATGATGATAGTTGTTGCA 581
|||||||| || |||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 578 GGGAAGGTCTAAGAGGCGGATTTGTTTTCCAGAAACCGAGCCATGATGATTGTTGTTGCA 637
Query 582 TATGCTTGGGGAAATATGGAGAGGAAAAAGGAGTAGGACTAAGGAAACTTGAATGCTCAC 641
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 638 TATGCTTGGGGAAATATGGAGAGGAAGAGGGAGTAGCACTAAGGAAACTTGAATGCTCAC 697
Query 642 ACGTATTTCATTCGCAATGTATAGACAAATGGCTGAAAATCAAATCCACATGCCCTCTCT 701
| |||||||||||| | ||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 698 ATGTATTTCATTCGGAGTGTATAGACAAATGGCTGAGAATCAAATCCTCGTGCCCTCTCT 757
Query 702 GTCAATCACAAGTTAGGTG 720
|||||||||| ||||||||
Sbjct 758 GTCAATCACAGGTTAGGTG 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5