BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15590.1 Length=880 Score E Sequences producing significant alignments: (Bits) Value Ahg334843 jgi|Araly1|334843|fgenesh1_pg.C_scaffold_1001408 710 0.0 > Ahg334843 jgi|Araly1|334843|fgenesh1_pg.C_scaffold_1001408 Length=777 Score = 710 bits (384), Expect = 0.0 Identities = 477/522 (91%), Gaps = 6/522 (1%) Strand=Plus/Plus Query 1 ATGGACAGCGAATCCCACAGTGATAATGATGATCACATAATCGACATTACAAACGATGAA 60 ||||| ||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| || Sbjct 1 ATGGAGAGCGAATCCGACAATGATAATGATGAGCACATTATCGAAATTACAAACGACGAC 60 Query 61 GATTCTTCATCAAGATCGTCTTTGGACGAGAGAAGCTATC-CTTCATTAAGTTCGTCTCT 119 | ||||| ||| ||||||||||||||||||||||||| | |||||||||| |||||| | Sbjct 61 GGTTCTTTATCGGGATCGTCTTTGGACGAGAGAAGCTA-CTCTTCATTAAGCTCGTCTGT 119 Query 120 GTCTACGGATGACGAATCGTCAGATGAAGGTGCAAGTTCATCTACGAGAGACTGTGGTAG 179 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 120 GTCTACGGATGACGAAACGTCAGATGAAGGTGCAAGTTCATCTACGAGAGGCTGTGGTAG 179 Query 180 TCTTTGGAATATAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCATTAATAGT 239 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 180 TCTTTGGAATACAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCGTTAGTAGT 239 Query 240 TTTAACTCTGGCAAAAGATGAACATCAACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 TTTGACTGTGGCAAAAGATGAACATCTACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299 Query 300 CACTTGTGGCTGTATTACCATTACGCTCCTTATTCTCCTCTCGTGTGTCCGCAAATACAA 359 |||||||||||||||| ||| ||||||| || ||||||| ||||||||||||||||| || Sbjct 300 CACTTGTGGCTGTATTGCCAATACGCTCGTTCTTCTCCTTTCGTGTGTCCGCAAATATAA 359 Query 360 CCGAATTGGTGTTTACTCAAAAACGAGAACGGATAGGGTAATGGATGCTTTGAAGATGGG 419 ||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 360 CCGAATTGGGGTTTACTCAAGGACGAGAATTGATGGGGTAATGGATGCTTTGAAGATGGG 419 Query 420 GAAT-GAATGTTTCTTTGTTGTGTGGTTAGTTATGGGGAT-TCTATGGATTTGTTATGGA 477 ||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct 420 -AATTGAATGTTTCTTTGTTGTGTGGTTAGTTTTGGGGATAT-TATGGATTTGTTATGGA 477 Query 478 CACTCATCTTCTTCTGATACTCCTAAGCTCTACAGATTCTGT 519 ||||||||| |||||||| |||||||||||||||| || ||| Sbjct 478 CACTCATCTCCTTCTGATGCTCCTAAGCTCTACAGGTTATGT 519 Score = 279 bits (151), Expect = 2e-74 Identities = 183/199 (92%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 522 GGGAAGGTATAGGAGGTAGATTTGTTTTCAAGAAACCGAGCCATGATGATAGTTGTTGCA 581 |||||||| || |||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 578 GGGAAGGTCTAAGAGGCGGATTTGTTTTCCAGAAACCGAGCCATGATGATTGTTGTTGCA 637 Query 582 TATGCTTGGGGAAATATGGAGAGGAAAAAGGAGTAGGACTAAGGAAACTTGAATGCTCAC 641 |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| Sbjct 638 TATGCTTGGGGAAATATGGAGAGGAAGAGGGAGTAGCACTAAGGAAACTTGAATGCTCAC 697 Query 642 ACGTATTTCATTCGCAATGTATAGACAAATGGCTGAAAATCAAATCCACATGCCCTCTCT 701 | |||||||||||| | ||||||||||||||||||| |||||||||| | |||||||||| Sbjct 698 ATGTATTTCATTCGGAGTGTATAGACAAATGGCTGAGAATCAAATCCTCGTGCCCTCTCT 757 Query 702 GTCAATCACAAGTTAGGTG 720 |||||||||| |||||||| Sbjct 758 GTCAATCACAGGTTAGGTG 776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32595094035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5