BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15600.1

Length=1246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312551 jgi|Araly1|312551|fgenesh1_pm.C_scaffold_1001331           512    2e-144


> Ahg312551 jgi|Araly1|312551|fgenesh1_pm.C_scaffold_1001331
Length=582

 Score =  512 bits (277),  Expect = 2e-144
 Identities = 340/370 (92%), Gaps = 5/370 (1%)
 Strand=Plus/Plus

Query  212  AACATCCACAAACAATGTTGTCTATATGGATCATC-GGTTATACATGTGGCTGTATTGCC  270
            |||||||||||||| | |||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct  166  AACATCCACAAACACTATTGTTTATATGGATCATCGGGTTATACTTGTGGCTGTATCGCC  225

Query  271  ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGCGTTGGCTCCGAATCT  330
            |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  226  ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGTGTTGGCCCCGAATCT  285

Query  331  ACAGATGAATACTTAAGAGAGACAAGAATCAACAAGGATATGGACTTTTTTATGACGGGT  390
            | ||| ||| |||||||||||| |||||||||||||||| ||||||||||||||| | ||
Sbjct  286  ATAGAAGAACACTTAAGAGAGAAAAGAATCAACAAGGATTTGGACTTTTTTATGATGTGT  345

Query  391  TTCTTCGTGGGTTGGTATGTGGTGTTTTTATGGATTCTT-TCTTCCAAAGCATTCGACTC  449
            |||||||||||||||| |||||| |||||||||||| || ||||||| ||||||| ||||
Sbjct  346  TTCTTCGTGGGTTGGTTTGTGGTTTTTTTATGGATT-TTATCTTCCATAGCATTCAACTC  404

Query  450  ATCAGCTCTAGATGATACTACAACTCAATACTTCTGGTTATGTTTGGCTCTCCTTACTTT  509
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  405  ATCAGCTCTAGATGATACTACTACTCAATTCTTCTGGTTATGTTTGGCTCTCCTTACTTT  464

Query  510  CAGTTGCATTAGATATGTTCTTTTTAATCTAACATTGGCAATGGTCTGTTATAC-TACTC  568
            ||||||||||||||||||  ||||||||||||||||||||||||||||||| || |  ||
Sbjct  465  CAGTTGCATTAGATATGTAATTTTTAATCTAACATTGGCAATGGTCTGTTACACCTG-TC  523

Query  569  CTTTGCTTTT  578
            || |||||||
Sbjct  524  CTATGCTTTT  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46548081657


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5