BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15600.1 Length=1246 Score E Sequences producing significant alignments: (Bits) Value Ahg312551 jgi|Araly1|312551|fgenesh1_pm.C_scaffold_1001331 512 2e-144 > Ahg312551 jgi|Araly1|312551|fgenesh1_pm.C_scaffold_1001331 Length=582 Score = 512 bits (277), Expect = 2e-144 Identities = 340/370 (92%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 212 AACATCCACAAACAATGTTGTCTATATGGATCATC-GGTTATACATGTGGCTGTATTGCC 270 |||||||||||||| | |||| ||||||||||||| |||||||| ||||||||||| ||| Sbjct 166 AACATCCACAAACACTATTGTTTATATGGATCATCGGGTTATACTTGTGGCTGTATCGCC 225 Query 271 ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGCGTTGGCTCCGAATCT 330 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 226 ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGTGTTGGCCCCGAATCT 285 Query 331 ACAGATGAATACTTAAGAGAGACAAGAATCAACAAGGATATGGACTTTTTTATGACGGGT 390 | ||| ||| |||||||||||| |||||||||||||||| ||||||||||||||| | || Sbjct 286 ATAGAAGAACACTTAAGAGAGAAAAGAATCAACAAGGATTTGGACTTTTTTATGATGTGT 345 Query 391 TTCTTCGTGGGTTGGTATGTGGTGTTTTTATGGATTCTT-TCTTCCAAAGCATTCGACTC 449 |||||||||||||||| |||||| |||||||||||| || ||||||| ||||||| |||| Sbjct 346 TTCTTCGTGGGTTGGTTTGTGGTTTTTTTATGGATT-TTATCTTCCATAGCATTCAACTC 404 Query 450 ATCAGCTCTAGATGATACTACAACTCAATACTTCTGGTTATGTTTGGCTCTCCTTACTTT 509 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 405 ATCAGCTCTAGATGATACTACTACTCAATTCTTCTGGTTATGTTTGGCTCTCCTTACTTT 464 Query 510 CAGTTGCATTAGATATGTTCTTTTTAATCTAACATTGGCAATGGTCTGTTATAC-TACTC 568 |||||||||||||||||| ||||||||||||||||||||||||||||||| || | || Sbjct 465 CAGTTGCATTAGATATGTAATTTTTAATCTAACATTGGCAATGGTCTGTTACACCTG-TC 523 Query 569 CTTTGCTTTT 578 || ||||||| Sbjct 524 CTATGCTTTT 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46548081657 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5