BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15610.1

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920465 jgi|Araly1|920465|scaffold_101746.1                        355    2e-97


> Ahg920465 jgi|Araly1|920465|scaffold_101746.1
Length=586

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 329/391 (84%), Gaps = 25/391 (6%)
 Strand=Plus/Plus

Query  14   AGAAGAAAGCAAAAAAGTGATCAATGGAGGGCCCTTTGTTAACCAAGAGTGAGCACAACG  73
            |||||||| |||||| || ||||||||||||||||||||| |||||||||| ||||||||
Sbjct  1    AGAAGAAAACAAAAAGGT-ATCAATGGAGGGCCCTTTGTTGACCAAGAGTGGGCACAACG  59

Query  74   TCGAAGACGTTACAATCCATGGCGATTCTTCCTCAAATGATGAGCACATCATCGACATTA  133
            |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct  60   TCGATGACGTTACAATCCATGGCGATTCTTCCTCGAATGATGAGCACATCGTCGACATAA  119

Query  134  CAATCAATGGCGGTTCGTCATCAGCTGATCATGAGCAAACTCCACATGAG-GCATTTCAA  192
            |||||||||||  ||| |     |   ||   |||||||| |||| |||| |  || |||
Sbjct  120  CAATCAATGGCAATTC-T-----G---AT---GAGCAAACACCACGTGAGAGTGTT-CAA  166

Query  193  TGGAGTTGTCCATTT-ACAAGTGGAAGT-TTCTGGATTTTGGTCGAGTTAGCTGTGACTT  250
            |||||| || || |  |||| | || || || ||||||||||||||||| | | ||||||
Sbjct  167  TGGAGT-GTTCAATCCACAAATCGATGTGTT-TGGATTTTGGTCGAGTTTGTTATGACTT  224

Query  251  TGGTCCAGATTGTTGCAGCCATATTTTTTCTG-ATTCTAACAAAAGATGAACGAGA-TCC  308
            || |||||||||||||||||||||||||| || | ||| ||||||||||||| ||| |||
Sbjct  225  TGTTCCAGATTGTTGCAGCCATATTTTTT-TGTACTCTGACAAAAGATGAAC-AGAATCC  282

Query  309  AGAACTAGATGTAGCTTTGTTTACATGGATCATCTTTTATACTTGTGCCTCTATTGCCAC  368
            ||||||||| | |  || ||||| ||||||||||  ||||||||||||||||||||||||
Sbjct  283  AGAACTAGAAGAATATTGGTTTATATGGATCATCGGTTATACTTGTGCCTCTATTGCCAC  342

Query  369  T-TTGCCTTTTGTATGTTGCCGTTTATGGCA  398
            | || ||| || ||||||| |||||||||||
Sbjct  343  TCTT-CCTCTTCTATGTTGGCGTTTATGGCA  372


 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 72/85 (85%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  554  GGTTATGGCTGGGTCTACTTGCTTTCAGTTGCATTCGATATGTGCTTCCTAATTTCCAAT  613
            |||||||| ||| ||||||||||||||||||||||||||||||||| |||||  || |||
Sbjct  387  GGTTATGGATGGCTCTACTTGCTTTCAGTTGCATTCGATATGTGCTCCCTAACCTCGAAT  446

Query  614  TTACCGTACAGTTATTCATGTTGCC  638
            || | ||| |||  ||| ||| |||
Sbjct  447  TTTCAGTAAAGTCCTTCGTGTGGCC  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28325327331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5