BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15620.1 Length=886 Score E Sequences producing significant alignments: (Bits) Value Ahg911368 jgi|Araly1|911368|Al_scaffold_0001_1622 846 0.0 Ahg920465 jgi|Araly1|920465|scaffold_101746.1 222 3e-57 > Ahg911368 jgi|Araly1|911368|Al_scaffold_0001_1622 Length=744 Score = 846 bits (458), Expect = 0.0 Identities = 586/648 (90%), Gaps = 8/648 (1%) Strand=Plus/Plus Query 50 ATGGA-GGACCCTTTGTTGACTCAGAGTGAGCACATCGTCGATGACGTTACAATCCATGG 108 ||||| || |||| |||||||| || ||||||||| |||||| |||||||||| |||||| Sbjct 1 ATGGATGG-CCCTCTGTTGACTAAGGGTGAGCACAACGTCGACGACGTTACAACCCATGG 59 Query 109 CGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTTACAACCAATGGCAATCCTTCATC 168 ||||||||| ||||||||||||||||||||||| |||||||| || | | || ||||||| Sbjct 60 CGATTCTTCCTCAAATGAAGAGCACATCGTCGATGTTACAACGAACGACGATTCTTCATC 119 Query 169 AGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGGAGTGATATATTTACATTTACCAC 228 ||||||| | ||| ||| ||||||| ||| |||||||||| | ||||||| |||| | Sbjct 120 TGCTGATGCGCAAACACCTCATGAGGATGTTCAATGGAGTGTTGTATTTACGTTTAGAAA 179 Query 229 TG-TTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAGTCCAGATTGTTGCCGCCATTGTTG 287 || |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 180 TGTTTTG-ATTTTGGTCGAGTTTGTTGTGGCTTTGGTCCAGATTGTTGCAGCCATTGTTG 238 Query 288 TTCTGACTCTGGCAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATCCTCA 347 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 239 TTCTTACTCTGACAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATTCTCA 298 Query 348 GTTATACCGGTTGCTGTATTGCCACACTCCCTATTCTAGGTTTGCGTTTCTGGCATTCTT 407 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || Sbjct 299 GTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCTAGGTTTGCGTTTCTGGCAGTATT 358 Query 408 ACCGAAGTGTTAGCACAGAGACAAGAATCTACGAGGTGGTGGACATTTTGAAAAAGATGC 467 |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct 359 ACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGGTGGTGGACAATTTGAAAAAGATTC 418 Query 468 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTATGGCATCTTATCAACAACTCAT 527 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 419 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTCTGGCATCTTATCAACAACTCAG 478 Query 528 CATCTATAGATAATACTACGCAACAGTTCTGGTTATGTATGACTTTCCTTGCTATCAGCT 587 ||||| |||||| | | ||||||||||| |||||||||||| |||||||||||||||||| Sbjct 479 CATCTCTAGATATTGCGACGCAACAGTTATGGTTATGTATGGCTTTCCTTGCTATCAGCT 538 Query 588 GCATTCTACATGT-TCTTCGTAATCTCCCCTGTGCGG-GAGTTTGTTTTCTGTATCCTAT 645 ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 539 GCATTCTACATGTGT-TTCGTAATCTCCCCTGTGCGGCGA-TTTGTTTTCTGTATCCTAT 596 Query 646 GATACTATATCTTTCCCAATCGATAGACTTCGTTGGTGACATTACTGA 693 ||||||| |||| |||| || ||||||||| ||| || ||||||||| Sbjct 597 GATACTACGTCTTACCCAGTCTATAGACTTCTTTGATGGCATTACTGA 644 > Ahg920465 jgi|Araly1|920465|scaffold_101746.1 Length=586 Score = 222 bits (120), Expect = 3e-57 Identities = 307/392 (78%), Gaps = 34/392 (9%) Strand=Plus/Plus Query 29 AGAAGAAAGC-AGAA-GTGATAAATGGAGGACCCTTTGTTGACTC-AGAGTGAGCACATC 85 |||||||| | | || || || |||||||| |||||||||||| | |||||| ||||| | Sbjct 1 AGAAGAAAACAAAAAGGT-ATCAATGGAGGGCCCTTTGTTGAC-CAAGAGTGGGCACAAC 58 Query 86 GTCGATGACGTTACAATCCATGGCGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTT 145 |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| | Sbjct 59 GTCGATGACGTTACAATCCATGGCGATTCTTCCTCGAATGATGAGCACATCGTCGACATA 118 Query 146 ACAACCAATGGCAATCCTTCATCAGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGG 205 |||| |||||||||| | | | | ||||| ||| ||| | |||| |||| |||||| Sbjct 119 ACAATCAATGGCAAT--T-C-T--G---ATGAGCAAACACCACGTGAGAGTGTTCAATGG 169 Query 206 AGTGAT-ATATTTACATTTACCAC-TGTTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAG 263 |||| | | || ||| | | | |||||| |||||||||||||||||| || |||| | Sbjct 170 AGTGTTCA-ATCCACAAAT-CGATGTGTTTGGATTTTGGTCGAGTTTGTTATGACTTT-G 226 Query 264 T-CCAGATTGTTGCCGCCAT-TGTTGTTCTGACTCTGGCAAAAGATGAACA-ACCTCCAC 320 | |||||||||||| ||||| | || || | |||||| ||||||||||||| | |||| Sbjct 227 TTCCAGATTGTTGCAGCCATATTTTTTTGT-ACTCTGACAAAAGATGAACAGAA-TCCAG 284 Query 321 AA--A-AA-A-TGTTTCCT-ACACTG-ATCCTCAGTTATACCGGTTGC-TGTATTGCCAC 372 || | || | | || | | | || ||| || ||||||| || || | ||||||||| Sbjct 285 AACTAGAAGAATATTGGTTTATA-TGGATCATCGGTTATACTTGT-GCCTCTATTGCCAC 342 Query 373 ACTCCCTATTCTAGGTTTGCGTTTCTGGCATT 404 || ||| ||||| ||| |||||| ||||||| Sbjct 343 TCTTCCTCTTCTATGTTGGCGTTTATGGCATT 374 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32823831537 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5