BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15620.1
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911368 jgi|Araly1|911368|Al_scaffold_0001_1622 846 0.0
Ahg920465 jgi|Araly1|920465|scaffold_101746.1 222 3e-57
> Ahg911368 jgi|Araly1|911368|Al_scaffold_0001_1622
Length=744
Score = 846 bits (458), Expect = 0.0
Identities = 586/648 (90%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 50 ATGGA-GGACCCTTTGTTGACTCAGAGTGAGCACATCGTCGATGACGTTACAATCCATGG 108
||||| || |||| |||||||| || ||||||||| |||||| |||||||||| ||||||
Sbjct 1 ATGGATGG-CCCTCTGTTGACTAAGGGTGAGCACAACGTCGACGACGTTACAACCCATGG 59
Query 109 CGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTTACAACCAATGGCAATCCTTCATC 168
||||||||| ||||||||||||||||||||||| |||||||| || | | || |||||||
Sbjct 60 CGATTCTTCCTCAAATGAAGAGCACATCGTCGATGTTACAACGAACGACGATTCTTCATC 119
Query 169 AGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGGAGTGATATATTTACATTTACCAC 228
||||||| | ||| ||| ||||||| ||| |||||||||| | ||||||| |||| |
Sbjct 120 TGCTGATGCGCAAACACCTCATGAGGATGTTCAATGGAGTGTTGTATTTACGTTTAGAAA 179
Query 229 TG-TTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAGTCCAGATTGTTGCCGCCATTGTTG 287
|| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 180 TGTTTTG-ATTTTGGTCGAGTTTGTTGTGGCTTTGGTCCAGATTGTTGCAGCCATTGTTG 238
Query 288 TTCTGACTCTGGCAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATCCTCA 347
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 TTCTTACTCTGACAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATTCTCA 298
Query 348 GTTATACCGGTTGCTGTATTGCCACACTCCCTATTCTAGGTTTGCGTTTCTGGCATTCTT 407
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 299 GTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCTAGGTTTGCGTTTCTGGCAGTATT 358
Query 408 ACCGAAGTGTTAGCACAGAGACAAGAATCTACGAGGTGGTGGACATTTTGAAAAAGATGC 467
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 359 ACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGGTGGTGGACAATTTGAAAAAGATTC 418
Query 468 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTATGGCATCTTATCAACAACTCAT 527
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTCTGGCATCTTATCAACAACTCAG 478
Query 528 CATCTATAGATAATACTACGCAACAGTTCTGGTTATGTATGACTTTCCTTGCTATCAGCT 587
||||| |||||| | | ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 479 CATCTCTAGATATTGCGACGCAACAGTTATGGTTATGTATGGCTTTCCTTGCTATCAGCT 538
Query 588 GCATTCTACATGT-TCTTCGTAATCTCCCCTGTGCGG-GAGTTTGTTTTCTGTATCCTAT 645
||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 539 GCATTCTACATGTGT-TTCGTAATCTCCCCTGTGCGGCGA-TTTGTTTTCTGTATCCTAT 596
Query 646 GATACTATATCTTTCCCAATCGATAGACTTCGTTGGTGACATTACTGA 693
||||||| |||| |||| || ||||||||| ||| || |||||||||
Sbjct 597 GATACTACGTCTTACCCAGTCTATAGACTTCTTTGATGGCATTACTGA 644
> Ahg920465 jgi|Araly1|920465|scaffold_101746.1
Length=586
Score = 222 bits (120), Expect = 3e-57
Identities = 307/392 (78%), Gaps = 34/392 (9%)
Strand=Plus/Plus
Query 29 AGAAGAAAGC-AGAA-GTGATAAATGGAGGACCCTTTGTTGACTC-AGAGTGAGCACATC 85
|||||||| | | || || || |||||||| |||||||||||| | |||||| ||||| |
Sbjct 1 AGAAGAAAACAAAAAGGT-ATCAATGGAGGGCCCTTTGTTGAC-CAAGAGTGGGCACAAC 58
Query 86 GTCGATGACGTTACAATCCATGGCGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTT 145
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
Sbjct 59 GTCGATGACGTTACAATCCATGGCGATTCTTCCTCGAATGATGAGCACATCGTCGACATA 118
Query 146 ACAACCAATGGCAATCCTTCATCAGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGG 205
|||| |||||||||| | | | | ||||| ||| ||| | |||| |||| ||||||
Sbjct 119 ACAATCAATGGCAAT--T-C-T--G---ATGAGCAAACACCACGTGAGAGTGTTCAATGG 169
Query 206 AGTGAT-ATATTTACATTTACCAC-TGTTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAG 263
|||| | | || ||| | | | |||||| |||||||||||||||||| || |||| |
Sbjct 170 AGTGTTCA-ATCCACAAAT-CGATGTGTTTGGATTTTGGTCGAGTTTGTTATGACTTT-G 226
Query 264 T-CCAGATTGTTGCCGCCAT-TGTTGTTCTGACTCTGGCAAAAGATGAACA-ACCTCCAC 320
| |||||||||||| ||||| | || || | |||||| ||||||||||||| | ||||
Sbjct 227 TTCCAGATTGTTGCAGCCATATTTTTTTGT-ACTCTGACAAAAGATGAACAGAA-TCCAG 284
Query 321 AA--A-AA-A-TGTTTCCT-ACACTG-ATCCTCAGTTATACCGGTTGC-TGTATTGCCAC 372
|| | || | | || | | | || ||| || ||||||| || || | |||||||||
Sbjct 285 AACTAGAAGAATATTGGTTTATA-TGGATCATCGGTTATACTTGT-GCCTCTATTGCCAC 342
Query 373 ACTCCCTATTCTAGGTTTGCGTTTCTGGCATT 404
|| ||| ||||| ||| |||||| |||||||
Sbjct 343 TCTTCCTCTTCTATGTTGGCGTTTATGGCATT 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32823831537
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5