BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15660.1
Length=2375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471760 jgi|Araly1|471760|fgenesh2_kg.1__1714__AT1G15660.1 3301 0.0
> Ahg471760 jgi|Araly1|471760|fgenesh2_kg.1__1714__AT1G15660.1
Length=2331
Score = 3301 bits (1787), Expect = 0.0
Identities = 2169/2349 (92%), Gaps = 44/2349 (2%)
Strand=Plus/Plus
Query 26 AAATCCCATCGCCGGGGAATTTTCCGGTGATTTAGATGGCTGATGTGAGCCGGAGTTCAA 85
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCCCATGGCCGGGGAATTTCCCGGTGATTTAGATGGCTGATGTGAGCCGGAGTTCAA 60
Query 86 GTTTATATACCGAGGAGGATCCCCTTCAAGCTTACTCAGGGCTTTCGTTGTTTCCTCGCA 145
||||| || | ||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 61 GTTTAGAT---GCGGAGGATCCTCTTCAAGCTTACTCAGGACTTTCCTTGTTTCCTCGCA 117
Query 146 CACTAAAATCCTTGTCGAATCCTCTTCCTCCT--TCTT-ATCAATCAGAAGATCTACAGC 202
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 118 CACTAAAATCCTTGTCGAATCCTCTTCCTCCTCCTCTTCATCAATCAGAAGATCTACAGC 177
Query 203 AGACTCATACTCTCCTTCAATCTATGCCTTTTGAAATTCAAAGTGAGCATCAGGAGCAGG 262
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 178 AGACTCATACTCTCCTTGAATCTATGCCTTTTGAAGTTCAAAATGAGCATCAGGAGCAGG 237
Query 263 CAAAAGCTATCTTAGAAGATGTGGATGTCGATGTCCAGCTGAACCCTATTCCAAATAAAC 322
||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 238 CAAAAGCTATCTTTGAAGATGTGAATGTTGATGTCAAGCTGAACCCTATTCCAAATAAAC 297
Query 323 GAGAAAGAAGACCGGGATTAGACCGTAAGCGAAAAAGCTTTTCTCTTCACCTTACGACAA 382
||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 298 GAGAACGAAGACTGGGATTAGACCGTAAGCGAAAAAGCTTTTCTCTTAACCTTACGTCAA 357
Query 383 GTCAACCACCTCCAGTTGCACCAAGCTTTGATCCTAGTAAATATCCAAGATCTGAGGATT 442
|||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||
Sbjct 358 GTCAACCACCTCCAGTTGCACCAAGCTTTGATGGTAGTAAATATCCGAGACCTGAAGATT 417
Query 443 TCTTTGCTGCGTATGATAAATTTGAACTTGCCAATCGAGAATGGCAGAAACAGACTGGCT 502
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTTGCTGAGTATGATAAATTTGAACTTGCCAATCGAGAATGGCAGAAACAGACTGGCT 477
Query 503 CCAGTGTAATAGATATACAAGAGAACCCGCCATCAAGGCGCCCTCGCAGACCAGGAATTC 562
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 478 CCAGTGTAATAGATACACAACAGAACCCGCCATCAAGGCGTCCTCGCAGACCAGGAATTC 537
Query 563 CAGGGAGGAAACGTCGTCCATTCAAGGAAAGTTTTACGGATAGTTATTTCACTGATGTTA 622
||||||||||||| ||||||||| || | | |||||||||||||||||||||||||| ||
Sbjct 538 CAGGGAGGAAACGGCGTCCATTCGAGCATACTTTTACGGATAGTTATTTCACTGATGCTA 597
Query 623 TCAACCTGGAAGCTTCAGAAAAGGAAATCCCCATTGCTTCTGAACAAAGCTTAGAGAGTG 682
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 598 TCAACCTGGAAGCTTCAGAAAAGGAAAACCCCATTGCTTCTGAACAAAGTTTAGAGAG-G 656
Query 683 -CCACAGCTGCACATGTTACGACTGTGGACAGGGAAGTAGATGATTCAACCGTAGACACG 741
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 ACCACAGCTGCACATGTTACGACTGTGGACAGGGAAGTAGATGATTCAACTGTAGACACA 716
Query 742 GACAAAGACTTAAACAATGTGTTGAAAGATTTGCTTGCTTGCAGTCGAGAGGAGCTTGAG 801
||||| |||||||||||| | |||||||| |||||||||| ||||||||| ||||| |||
Sbjct 717 GACAAGGACTTAAACAATATTTTGAAAGAGTTGCTTGCTTCCAGTCGAGATGAGCTCGAG 776
Query 802 GGAGATGGTGCCATCAAGCTTTTGGAGGAGCG-CTTGCAAATCAAGTCCTTTAATATAGA 860
||||||| |||| |||||| ||||||||| | |||||||||||| ||| ||||| | ||
Sbjct 777 GGAGATGCTGCCGTCAAGCGTTTGGAGGA-TGTCTTGCAAATCAAATCCCTTAATGTGGA 835
Query 861 AAAATTCTCTATCCCTGAGTTTCAAGATGTTCGAAAAATGAACT-TGAAGGCATCTGGAA 919
||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 836 AAAGTTCTCTATCCCTGAGTTTCAAGATGTTAGAAAAATGAA-TATGAAGGCATCTGGAA 894
Query 920 GTAACCCACCAAACCGAAAGAGTCTGTCAGATATACAGAATATTCTGAAAGGAACTAACA 979
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 895 GTAACCCATCAAACCGAAAGAGTCTGTCAGATATACAGAATATACTGAAAGGAATTCACA 954
Query 980 GAGTTGCGGTTCGAAAAAATAGCCACTCGCCATCCCCTCAGACGATAAAACATTTTTCAT 1039
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 955 GAGTTGCGGTTCGAAAAAATAGCCACTCGCCATCCCCTCAGACTAGAAAACATTTTTCAT 1014
Query 1040 CACCAAATCCACCAGTGGATCAGTTTTCATTTCCTGACATCCATAATTTGCTTCCAGGAG 1099
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1015 CACCAAATCCACTAGTGGATCAGTTTTCCTTTCCTGACATCCATAATTTGCTTCCAGGAG 1074
Query 1100 ATCAACAGCCTAGTGAGGTTAATGTACAACCTATAGCAAAAGATATACCTAATACATCCC 1159
|||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||
Sbjct 1075 ATCAACAGCCTAGTGAGGTTGATGTTCAACCTCTAGCAAAAGATATAGCTAATACATCCC 1134
Query 1160 CAACTAATGTAGGTACTGTAGACGTTGCTAGCCCTTTCAACGACTCAGTGGTGAAGAGGT 1219
| ||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1135 CGTCTACTGTGGGTACTGTAGACGTTGCTAGCCCTTTCAACAACTCAGTGGAGAAGAGGT 1194
Query 1220 CCGGTGAAGATGATTCTCATATTCATTCTGGCATCCATAGATCTCATTTAAGTCGAGATG 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1195 CCGGTGAAGATGATTCTCATATTCATTCTGGCATCCATAGATCTCATTTAAGTCCAGATG 1254
Query 1280 GGAATCCAGATATTTGTGTGATGGATAGCATTTCAAACCGAAGTTCAGCCATGCTACAGA 1339
||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||| ||
Sbjct 1255 GGAATGCAGATATTTGTGTGATAGATAGCATCTCAAACCGAAATTCAGCCATGCTAGAGG 1314
Query 1340 AAAATGTAGATATGCGAACAAAAGGAAAAGAGGTAGATGTGCCCATGAGTGAAAGTGGGG 1399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1315 TGAATGTAGATATGCGAACAAAAGGAAAAGAGGTAGATGTGCCCATGAGTGAAAGTGGAG 1374
Query 1400 CAAATAGAAACACTGGCGACAGGGAAAATGATGCTGAAATCAATGAAGAAACTGATAATT 1459
|||| |||||||||||| | || ||||||||| |||| |||||||||||||||||| |||
Sbjct 1375 CAAACAGAAACACTGGCCAAAGAGAAAATGATACTGATATCAATGAAGAAACTGATCATT 1434
Query 1460 TAGAAAGGCTGGCGGAATGTGCATCTAAAGAGGTTACAAGACCATTTACTGTAGAAGAGG 1519
|||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1435 TAGAAATGCTGGCGGAATATGCATCTAAAGAGGCTACAAGACCTTTTACTGTAGAAGAGG 1494
Query 1520 ATAGCATCCCGTATCAGCAAGGTGCATCCTCAAAATCTCCAAACAGAGCTCCAGAACAAT 1579
||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 1495 ATAGCATCCCGTATCAGCAAGGTACATCCTCAAACTCTCCGAACAGAGCTCCAGAACAAT 1554
Query 1580 ACAACACAATGGGTGGATCCCT-TGAACATGCAGAGCACAATCAGGGACTACATGAAGAG 1638
|||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACAACAAAATGGATGGAT-CCTCTGAACATGCAGAGCACAATCAGGGACTACATGAAGAA 1613
Query 1639 GAAAATGTCAACACGGGCTCCGCTTCTGGACTTCAAGTAGAAAATGCTC--C-GGAGGTT 1695
|||||||||||||||| | ||||||||||||||| | ||||||||||| | ||||| |
Sbjct 1614 GAAAATGTCAACACGGACGCCGCTTCTGGACTTC-A--AGAAAATGCTCTGCAGGAGGCT 1670
Query 1696 CACAAATATTCACACAAACAAACAAATAAACGAAGAAAGAGAGGATCTTCTGATAGCAAT 1755
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 CACAACTCTTCACACAAACAAACAAATAAACGAAGAAAGAGAGGATCTTCTGATAGCAAT 1730
Query 1756 GTGAAAAAGCGAAGTAAGACTGTGCATGGTGAGACTGGAGGGGACAAGCAAATGAAAACA 1815
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1731 GTGAAAAAGCGAAGTAAGACTGTGCATGGTGAGACTGGAGGGGACCCGCAAATGAAAACA 1790
Query 1816 TTACCACATgagagtagagcgaagaagcaaaccaaaggaaaatccaacgagagagaagag 1875
||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1791 TTACCACATGAGAGTGGTGTGAAGAAGCAAACCAAAAGAAAATCCAACGAGAGAGAAGAG 1850
Query 1876 aagaagcc---gaa---g---aaaaCTCTTACGCATGAGGGGAAACTATTCTCTTGCAGG 1926
|||||||| ||| | ||||||||||||| |||||| |||||||||||| |||||
Sbjct 1851 AAGAAGCCAAAGAACACGCGTAAAACTCTTACGCGTGAGGGTAAACTATTCTCTCGCAGG 1910
Query 1927 AAAAGCCTTGCTGCTGCTGGTACTAAAATTGAAGGTGGTGTCAGACGAAGTACAAGGATT 1986
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1911 AAAAGCCTTGCAGCTGCTGGTACTAAAATGGAAGGTGGTGTCAGACGAAGTACAAGGATT 1970
Query 1987 AAGTCGAGACCGCTCGAATACTGGAGAGGTGAAAGATTCTTGTACGGACGCATCCATGAG 2046
||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1971 AAGTCAAGACCACTCGAATACTGGAAAGGCGAAAGATTCTTGTACGGACGCATCCATGAG 2030
Query 2047 AGTTTGACTACTGTTATCGGCATAAAGTATGCATCCCCTGGAGAAGGTAAAAGAGA-TTC 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2031 AGTTTGACTACTGTTATCGGCATAAAGTATGCATCCCCTGGAGAAGGTAAAAGTGACTT- 2089
Query 2106 GCGCGCATCTAAGGTGAAATCATTCGTCTCCGATGAGTACAAAAAGCTGGTTGATTTTGC 2165
||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 2090 GCGTGCATGTAAGGTGAAATCATTTGTCTCTGATGAGTACAAAGAGCTGGTTGATTTTGC 2149
Query 2166 CGCCTT-GCATTGATATGAAGAATGATAAGCCTAGGAAGGAAATGATCAACCATCCTCTT 2224
||| || ||||||| | ||| |||||| |||||||||||| ||||||| |||||||||
Sbjct 2150 CGC-TTCGCATTGA-A-GAA---TGATAATCCTAGGAAGGAAGTGATCAAACATCCTCTT 2203
Query 2225 GTGATCAT--T---ATTGATAGTATCTTGTGTCAATGACCTTCACTTAGGTCCAAACTTG 2279
|||||||| | ||||||||||||||||||| | ||||||| ||| ||||||||||||
Sbjct 2204 GTGATCATAATTCTATTGATAGTATCTTGTGTCCACGACCTTCTCTTGGGTCCAAACTTG 2263
Query 2280 TCACTGTCTTTCTTTAAAACTGCAACACTTTTAAGACTTTGCAAATGTAACGGAGGTTTT 2339
|||||||||||||||||||| |||||||||| |||||| || |||||||||||| |||||
Sbjct 2264 TCACTGTCTTTCTTTAAAACCGCAACACTTT-AAGACTCTGTAAATGTAACGGAAGTTTT 2322
Query 2340 CAACTTTCA 2348
|||||||||
Sbjct 2323 CAACTTTCA 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89473985505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5