BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15670.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471761 jgi|Araly1|471761|fgenesh2_kg.1__1715__AT1G15670.1 1836 0.0
> Ahg471761 jgi|Araly1|471761|fgenesh2_kg.1__1715__AT1G15670.1
Length=1212
Score = 1836 bits (994), Expect = 0.0
Identities = 1146/1220 (94%), Gaps = 8/1220 (1%)
Strand=Plus/Plus
Query 32 TTCTAGAAGACTTATCCCTCTATAAAGTAGCCACACTCTTCTGTCTTCTCTCATCACCTC 91
|||||||| ||||||| |||||||||| ||||||| | ||||||||| |||||||
Sbjct 1 TTCTAGAAAACTTATCTCTCTATAAAGGAGCCACA-----C--TCTTCTCTC-TCACCTC 52
Query 92 ATTCATATCTCTCTCAACCTGAACATTTTCATTTTTTCTAAATCAAGAACTTCAAATCTT 151
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 53 ATTCATATCTCTCTCAACCTGAACATTTTCTTTTTTTCTAAATCAAGAACTTCAAATCTT 112
Query 152 GAAACTTTCTAAAAAGATGGAGCTTATTCCTGATCTTCCCGAAACTGTAGCCTACGAGTG 211
||| ||||||||| |||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 113 GAAGCTTTCTAAAGCGATGGAGCTTATTCCTGATCTTCCTGAATCCGTAGCCCGCGAGTG 172
Query 212 TCTCCTACGCTCCTCCTACAAGCAATTCCCTCTTATGGCCTCTGTTTGCAAACTCTGGCA 271
|||||||||| |||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 173 TCTCCTACGCGCCTCCTACCAGCAATTTCCACTTATGGCCTCTGTTTGCAAACTCTGGCA 232
Query 272 GCGAGAAATCAGCCTCTCTGATTTTTTCCGACACCGGAAAGCTTCAGGACATAGTCAAGA 331
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 GCGAGAAATCAGACTCTCTGATTTTTTCCGACACCGGAAAGCTTCAGGTCATAGTCAAGA 292
Query 332 GCTTGTTGTCTTGTCTCAAGCTCGGGTCGACCCGGTTAAAGAACTCGTATCGGGTAATAA 391
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 293 GCTTCTTGTCTTGTCTCAAGCTCGGGTCGACCCGGTTAAAGAACTCGGATCGGGTAATAA 352
Query 392 AACCATCCCCACCCCCGTGTACCGAATCTCGGTTCTTGAACTTGGTACCGGTCTAAGGAG 451
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 353 AACCATCCCCACGCCCGTGTACCGAATCTCGGTTCTTGAACTTGGTACCGGTCTAAGAAG 412
Query 452 CGAGCTGCCTCCGGTTCCAGGTCATTCCAACGGGTTGCCTCTGTTCTGCAGATTAGTCTC 511
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 413 CGAGCTGCCTCCGGTTCCAGGTCAATCCAACGGGTTGCCTCTGTTCTGTAGATTAGCCTC 472
Query 512 TGTCGGGTCGGATCTTGTTGTATTGTGCGGGCTTGACCCGGTTACATGGCGTACCTCTGA 571
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 473 TGTCGGGTCGGATCTTGTTGTATTGGGCGGGCTTGACCCGGTTACATGGCGTACCTCTGA 532
Query 572 TTCGGTCTTCGTTTTCAGCTTCTTGACCTCCACGTGGCGCGTCGGGAAGAGCATGCCAGG 631
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 533 TTCGGTCTTCGTTTTCAGCTTCTTGACCTCCACGTGGCGCGTCGGGAATAGCATGCCAGG 592
Query 632 TGGACCGCGTTCCTTCTTTGCCTGCGCTTCGGATTCTCAACGGAACGTCTTTGTGGCTGG 691
|||||| ||||||||||| || ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 593 TGGACCACGTTCCTTCTTCGCTTGCTCTTCGGATTCTCAACGGAACGTCTTCGTGGCGGG 652
Query 692 AGGACACGACGAAGACAAGAACGCGATGATGTCAGCTCTGGTGTATGACGTGGCAGAAGA 751
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 653 AGGACACGACGAAGACAAGAACGCGATGATGTCAGCTCTGATGTACGACGTGCCAGAAGA 712
Query 752 CAGATGGGCTTTCTTGCCGGATATGGGCCGTGAGCGAGACGAATGCACAGCTATTTTCCA 811
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CAAATGGGCTTTTTTGCCGGATATGGGCCGTGAGCGAGACGAATGCACAGCTATTTTCCA 772
Query 812 CGCTGGCAAATTCCATGTCATCGGTGGTTACTCCACGGAGGAACAAGGGCAATTTAGTAA 871
||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 773 CGCTGGCAAATTCCACGTCATCGGTGGTTACGCCACGGAGGAACAAGGGCAGTTTAGTAA 832
Query 872 AACTGCTGAATCGTTCGACGTCACCACATGGCGGTGGAGTCCACAAGGAGAAGAGTTTCT 931
||| ||||||||||||||||||||||| |||||||||||| |||||| || ||||||||
Sbjct 833 AACCGCTGAATCGTTCGACGTCACCACGTGGCGGTGGAGTTCACAAGCCGACGAGTTTCT 892
Query 932 CTCTTCGGAGATGACTATGTGGCCTCCGATTTGTGCTGCCGGTGAAAACGGAGATTTATA 991
||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 893 CTCCTCGGAGATGATTACATGGTCTCCGATTTGTGCTGCCGGTGAAAACGGAGATTTATA 952
Query 992 TGCTTGTTGTCGCCGTGATCTGATGATGATGAAAGATGACACGTGGTATAAAGTTGGGAA 1051
|||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 953 TGCTTGTTGTCGCCATGATCTGATGGTGATGAGAGATGACACGTGGCATAAAGTTGGGAA 1012
Query 1052 TCTACCTGCTGACGTGTGCAATGTATCTTACGTGGCGATAAGGAGGTCTGGAAACCTGGT 1111
|||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||
Sbjct 1013 TCTACCTGCTGACGTGTGCAATGTGTCTTACGTGGCGGTAAGGAGGTCTGGGAAGCTGGT 1072
Query 1112 TGTGATCGGTTCGGCTCGGTACGGCGAACCAAGTGTAGGGTATAATTGGGATATGAGCAA 1171
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1073 TGTGATCGGTTCGGCCCGGTATGGTGAACCAAGTGTAGGGTATAATTGGGATATGAGCAA 1132
Query 1172 TTCTCGATGGTTAAAACTGGAAACACATGATAAATATGAAGGCCACGTTCAAGCTGGTTG 1231
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1133 TTCTCGATGGGTGAAACTGGAAACACATGAAAAATATGAAGGCCACGTTCAAGCTGGTTG 1192
Query 1232 CTTCTTGGAGATATaaaaaa 1251
||||||||||||||||||||
Sbjct 1193 CTTCTTGGAGATATAAAAAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5