BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15680.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471762 jgi|Araly1|471762|fgenesh2_kg.1__1716__AT1G15680.1 1764 0.0
> Ahg471762 jgi|Araly1|471762|fgenesh2_kg.1__1716__AT1G15680.1
Length=1242
Score = 1764 bits (955), Expect = 0.0
Identities = 1156/1250 (92%), Gaps = 25/1250 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAATCGAGAAGTAAACT-GGATGAAGAGTGGTTGCAAGCGTAGAATAGAGCTTCC 59
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATCGAGAAGTAAA-TGGGATGAAGAGTGGTTGCAAGCGTAGAATAGAGCTTCC 59
Query 60 AGAGGAATTATTGGCAGAGATAGTGGCGAGATTACCTTTTATAAGTATAACGAGGTTCAA 119
||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 60 AGATGAAATATTGGCAGAGATAGTGGCGAGATTACCTTTTAGAAGTGTAACGAGGTTCAA 119
Query 120 GTCCGTGTGCAAAGGATGGAGATCATTAATAGAATCAACGTATTTCCGTCATCTATTTGT 179
| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 120 GGCCGTGTGCAAAGGATGGAGATCATTAATAGAATCAACGTACTTCCGTCGTCTATTTGT 179
Query 180 GTTTGCTCACCGAAACTCTTCATCGTCGTGGTCACTCGTGTGCGGGACATTTGGTTGGTC 239
||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GTTTGCTCACCAAAAATCTTCCTCGTCGTGGTCACTCATGTGCGGGACATTTGGTTGGTC 239
Query 240 AGTCGAGGAAATGGCGGGGTTCTACGGATGCAAGAGATATGGTCTTCCCCGTAGGCTAGG 299
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AGTCCAGGAAATGGCGGGGTTCTACGGGTGCAAGAGATATGGTCTTCCCCGTAGGCTAGG 299
Query 300 TTCATACATCCCGCCTCATGGCTTGGTGGATAAACATAAGATCGTAGCCTGCACGGACGG 359
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 300 TTCATACATCCCGCCTCATGGCTTGGTGGATAAATATAAGATCATAGCCTGCGCGGACGG 359
Query 360 ATTGGTTTTGCTTCAAACCGTAACGAAAAGAGAGACGTTCAGT-GTGGGTAGCCCGGTGT 418
|||||||||||||| ||||||||||||| ||||| |||||| | ||||||||||| ||||
Sbjct 360 ATTGGTTTTGCTTCGAACCGTAACGAAAGGAGAGGCGTTCA-TCGTGGGTAGCCCCGTGT 418
Query 419 TACGGCAGTGGGTTCAGCTCCCACCTCACCCTTGGAAAGGGATCAGTTCATCAGTTTTGG 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TACGGCAATGGGTTCAGCTCCCACCTCACCCTTGGAAAGGGATCAGTTCATCAGTTGAGG 478
Query 479 CGATAGGTCTAGTCACCCGAGTAGAAGACGGTGTCGTTATGGAGTATAAGGTGGTTTGTA 538
| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 479 TAACAGGTCTAGTCACCCGAGTAGAAGACAGTGTCGTTTTGGAGTATAAGGTGGTTTGTA 538
Query 539 TGGATATTGATTAC-CG-TTGGGAAGTTGAGTCCCTTATCTTGGAGATATATTCGTCACT 596
|||||| ||| || || || ||||||||||||||||||||| ||||||||||||||| |
Sbjct 539 TGGATAATGA--ACTCGGTTTGGAAGTTGAGTCCCTTATCTTTGAGATATATTCGTCAGT 596
Query 597 GACGGGAACGTGGACTCGCAAAAAAGTCCGTTGTCCTAGTCTCATCGTTTCTTTATCCTA 656
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 597 GACGGGAAGGTGGACTCGCAAAGAAGTCCGTTGTCCTCGTCTCATCGTTTCTTTATCCTA 656
Query 657 TAAAAGATGCTTGAGTTTGAAGAAGATGCTTCACTGGCTTGACACCCATTATCGTTGTCG 716
| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct 657 TCAAAGATGCTTGAGTTTGAACAAGATGCTTCACTGGCTTGATAACCATTATCGTTCTCG 716
Query 717 GAGTAGCGTGGGAGCCATTGTAGCATATGA-TGTCTATGCTGATGATGATGAGCAGCAGT 775
||||| ||||||||||||||||||||||| | ||||||||| ||||||| | |||||||
Sbjct 717 GAGTAATGTGGGAGCCATTGTAGCATATGACT-TCTATGCTGCTGATGATCAACAGCAGT 775
Query 776 TTCGCATTATCCCTTTTCCTGATCAAAAGGCTTGCTTTAGAAGAGCCTACACTACTTCAG 835
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 776 GTCGCGTTATCCCTTTTCCTGATCAAAAGGCTTGCTTTAGAAGAGCTTACACTACTTCCG 835
Query 836 GGGGATTCCT--TGTG--T-G--TA--TTAACAAAATCCATCTTCTATTGAGGCTTTGGA 886
|||||||||| | | | | || ||||||||||||||||||| |||||||||||||
Sbjct 836 GGGGATTCCTCATCTACATAGACTACATTAACAAAATCCATCTTCTGTTGAGGCTTTGGA 895
Query 887 GGCTTGAAGAGTACACAAGTGATTCAGGGAGATGGCAACTAACGCAGGAAATAAATCTAA 946
|||| || |||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 896 GGCTCGAGGAGTACACAAGTGATTCAGGGAGATGGCAATTAACGCAGGAGATCAATCTAA 955
Query 947 CATCTTTTGGTTGCGATCACC-ATTACTTTCCGGTGGCAATGCATCCCTCTGAAACCCAT 1005
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 956 CATCTTTTGGCTGCGATCACCGAT-ACTTTCCGGTGGCAATGCATCCCTCTGAAACCCAT 1014
Query 1006 ATCACTTATATGGGCAATCCGGAAAAGGCTTTGGTATCAATAGACTTGAAGACACACAAG 1065
|||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1015 ATCATTTATATGGGAAATCCGGACAAGGCTTTGGTGTCAATAGACTTGAAGACACACAAG 1074
Query 1066 CTTACACTCCACACTAAATCATCGGCTTATAGAGACACAATGGTTTACCACTATTTG-GA 1124
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1075 CTTACACTCCACACCAAATCATCAGCTTATAGAGACACAATGGTTTACCACTATTTGCG- 1133
Query 1125 TACTGTTTATGTATCAGTGGAA-GCAAGTTTTGATCACGACGTTTTCTACACACCCCAAT 1183
|||||| ||| ||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1134 TACTGTATATTTATCAGTA-AATGCAGGTTTTGATCACGACGTTTTCTACACACCCCAAT 1192
Query 1184 TCACACTCCCAACGTGGATGGGGTCGGTCCCTCGTTCACCTTCAATATAG 1233
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1193 TCACACTCCCAACGTGGATGGGGTCGGTCCCTCGTGCACCTTCAATATAG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5