BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15700.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920473 jgi|Araly1|920473|scaffold_101754.1 1821 0.0
Ahg943235 jgi|Araly1|943235|scaffold_603779.1 250 2e-65
> Ahg920473 jgi|Araly1|920473|scaffold_101754.1
Length=1187
Score = 1821 bits (986), Expect = 0.0
Identities = 1118/1180 (95%), Gaps = 15/1180 (1%)
Strand=Plus/Plus
Query 19 CCCAAACGAAAATGACAGGTTCGATCTCGACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 78
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 10 CCCAAACGAAAATGACAGGTTCGATCTCAACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 69
Query 79 CGAATTCGGCTTCGAGCTCAGAGTCCTACTCTTTCATAGCTACCTTGAAACCAGTTCGTT 138
| || || ||||| |||| ||||||||||||||||||||||||| |||| |
Sbjct 70 C-AA----------AG-TCAGATTCCTTCTCTTTCATAGCTACCTTGAAACCATTTCGCT 117
Query 139 ATTATCCGTTTCAATCACTGACACCAAACCGGATTTCGTCGAGATCTCCGTTGCCCTCAA 198
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 118 ATTATCCGTTTCAATCACTGACTCCAAATCGGATTTCGTCGAGATCTCCGTTG---TCAA 174
Query 199 TTCAAATTCGAGCTGGAATCCGAGAGTTACGAGAACGAATCGACAGTGTGAAGAATACCC 258
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 TTCAAATTCGATCTGGAATCCGAGAGTTACGAGAAAGAATCGACAGTGTGAAGAATACCC 234
Query 259 AGAAGATAACGGAAGCGATGAGACTCGTGGCGGCAGCTAGAGTTCGTCGAGCTCAAGATG 318
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 235 AGAAGATAACGGAGGCGATGAGACTCGTGGCAGCAGCTAGAGTTCGTCGAGCTCAAGATG 294
Query 319 CAGTCATAAAGGGTAGACCTTTCACTGAAACTCTTGTGGAGATTCTCTACTCAATTAACC 378
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 295 CTGTCATAAAGGGTAGACCTTTCACTGAAACCCTAGTGGAGATTCTCTACTCAATTAACC 354
Query 379 AATCTGCTCAATTAGAAGACATTGATTTTCCTCTGAGCATTGTTAGACCCGTGAAGAGAG 438
||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 355 AATGTGCTCAATTGGAAGACATTGATTTCCCTCTGAGCATTGTTAGACCTGTGAAGAGAG 414
Query 439 TTGCTTTGGTTGTTGTTACTGGCGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTGA 498
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 415 TTGCTTTAGTTGTTGTTACCGGTGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTCA 474
Query 499 CCAAGAAAGCTACTCTGCGAGTTCAAGAGTTGAAGCAGAGAGGAATAGACTGTGTTGTGA 558
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 475 TCAAGAAAGCTACTTTGCGAGTTCAGGAGTTGAAGCAAAGAGGAATAGACTGTGTTGTGA 534
Query 559 TAAGTGTAGGTAAGAAAGGGAATGCTTATTTTAGTCGGAGAGATGAATTTGATGTTGATA 618
| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 535 TTAGTGTGGGTAAGAAAGGGAATGCGTATTTTAGTCGGAGAGATGAATTCGAAGTTGATA 594
Query 619 AATGTATTGAAGGAGGAGGTGTTTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 678
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 AATGTATTGAAGGAGGAGGTGTTTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 654
Query 679 ATGTGTTTTCCTTGTTTGTCAGTGAAGAGGTTGATAAAGTTGAGCTTGTTTACACAAAGT 738
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 655 ATGTCTTTTCCTTGTTTGTCAGTGAAGAAGTTGATAAAGTTGAGCTTGTTTACACAAAGT 714
Query 739 TTGTGTCTTTGGTGAAATCTGATCCTGTGATCCACACTCTGTTGCCTTTGTCGATGAAAG 798
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 715 TTGTGTCTTTGGTGAAATCTGATCCTGTGGTTCACACTCTGTTGCCTTTGTCTATGAAAG 774
Query 799 GAGAGTCTTGTGATGTGAAAGGTGAGTGTGTTGATGCTATCGAGGATGAGATGTTTAGGC 858
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 775 GAGAGTCTTGTGATGTGAAAGGAGAGTGTGTTGATGCTATGGAGGATGAGATGTTTAGGC 834
Query 859 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 894
Query 919 AGATCTCACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 978
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGATATCACCATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 954
Query 979 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTG 1038
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 955 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCG 1014
Query 1039 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1074
Query 1099 TGACGATGGCTTATAACCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1158
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGACAATGGCTTATAATCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1134
Query 1159 TGGCTGGAGCAGAAGCTCTTCGAGAGTCTTAGGTAGAAAC 1198
||||||||||||| |||||||||||||||||| |||||||
Sbjct 1135 TGGCTGGAGCAGAGGCTCTTCGAGAGTCTTAGTTAGAAAC 1174
> Ahg943235 jgi|Araly1|943235|scaffold_603779.1
Length=1208
Score = 250 bits (135), Expect = 2e-65
Identities = 419/550 (76%), Gaps = 44/550 (8%)
Strand=Plus/Plus
Query 641 TTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTGTTTTCCT-TGTTTGTCA 699
||| || ||| ||||||||||||||| | | || |||||||| || | || ||||| | |
Sbjct 622 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 680
Query 700 GTGAAGAGGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 758
| ||||| || |||||||| |||| | || ||||||||||||||||||||||| |||||
Sbjct 681 GCGAAGAAGTCGATAAAGTCGAGC-TCTTGTACACAAAGTTTGTGTCTTTGGTCAAATCA 739
Query 759 GATCCTGTGATCCACACTCTGTTGCCTTTGTCGA--TGAAAGGAGAG-TCTTGTGATGTG 815
|| || ||||||||||| || |||||| | || | | ||||||||| || ||||| |
Sbjct 740 GAACCCGTGATCCACACGCTATTGCCTCTATC-ACCT-AAAGGAGAGATC-TGTGACATT 796
Query 816 AAAGGTGA-GTGTGTTGATGCTATC-GAGGATGAGA-TGTTTAGGCTAACGAGC-AAA-G 870
|| || || |||||||||||| | || ||||| | |||| |||||||||| | ||| |
Sbjct 797 AATGG-GACCTGTGTTGATGCT-GCGGAAGATGA-ATTGTTCAGGCTAACGA-CGAAAGG 852
Query 871 ATGGGAAGTTAG-CTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATCT 924
| ||||| || | | || |||| || || ||| || || | | | |||| |||
Sbjct 853 A-GGGAAATT-GACGGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCT 905
Query 925 CACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGT 984
| ||| | |||| || ||||||||||||||||||||||||||||| || ||||| |||
Sbjct 906 CGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGT 965
Query 985 ATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTGC-GTCG 1043
|||| |||||||||||||| || ||| | ||||| || || || ||||||||||| | |
Sbjct 966 ATCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CT 1024
Query 1044 AGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TG 1100
|| |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || |
Sbjct 1025 AGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTTAAGAA-A-TCGCTT 1081
Query 1101 ACGATGGCT-TATAACCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTG 1158
| |||| | ||||| || | | || |||||||| ||||| ||| || || |||||||
Sbjct 1082 TCCATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTG 1139
Query 1159 TGGCTGGAGC 1168
| ||||||||
Sbjct 1140 TTGCTGGAGC 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5