BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15700.1 Length=1250 Score E Sequences producing significant alignments: (Bits) Value Ahg920473 jgi|Araly1|920473|scaffold_101754.1 1821 0.0 Ahg943235 jgi|Araly1|943235|scaffold_603779.1 250 2e-65 > Ahg920473 jgi|Araly1|920473|scaffold_101754.1 Length=1187 Score = 1821 bits (986), Expect = 0.0 Identities = 1118/1180 (95%), Gaps = 15/1180 (1%) Strand=Plus/Plus Query 19 CCCAAACGAAAATGACAGGTTCGATCTCGACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 78 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 10 CCCAAACGAAAATGACAGGTTCGATCTCAACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 69 Query 79 CGAATTCGGCTTCGAGCTCAGAGTCCTACTCTTTCATAGCTACCTTGAAACCAGTTCGTT 138 | || || ||||| |||| ||||||||||||||||||||||||| |||| | Sbjct 70 C-AA----------AG-TCAGATTCCTTCTCTTTCATAGCTACCTTGAAACCATTTCGCT 117 Query 139 ATTATCCGTTTCAATCACTGACACCAAACCGGATTTCGTCGAGATCTCCGTTGCCCTCAA 198 |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 118 ATTATCCGTTTCAATCACTGACTCCAAATCGGATTTCGTCGAGATCTCCGTTG---TCAA 174 Query 199 TTCAAATTCGAGCTGGAATCCGAGAGTTACGAGAACGAATCGACAGTGTGAAGAATACCC 258 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 175 TTCAAATTCGATCTGGAATCCGAGAGTTACGAGAAAGAATCGACAGTGTGAAGAATACCC 234 Query 259 AGAAGATAACGGAAGCGATGAGACTCGTGGCGGCAGCTAGAGTTCGTCGAGCTCAAGATG 318 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 235 AGAAGATAACGGAGGCGATGAGACTCGTGGCAGCAGCTAGAGTTCGTCGAGCTCAAGATG 294 Query 319 CAGTCATAAAGGGTAGACCTTTCACTGAAACTCTTGTGGAGATTCTCTACTCAATTAACC 378 | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 295 CTGTCATAAAGGGTAGACCTTTCACTGAAACCCTAGTGGAGATTCTCTACTCAATTAACC 354 Query 379 AATCTGCTCAATTAGAAGACATTGATTTTCCTCTGAGCATTGTTAGACCCGTGAAGAGAG 438 ||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 355 AATGTGCTCAATTGGAAGACATTGATTTCCCTCTGAGCATTGTTAGACCTGTGAAGAGAG 414 Query 439 TTGCTTTGGTTGTTGTTACTGGCGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTGA 498 ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| | Sbjct 415 TTGCTTTAGTTGTTGTTACCGGTGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTCA 474 Query 499 CCAAGAAAGCTACTCTGCGAGTTCAAGAGTTGAAGCAGAGAGGAATAGACTGTGTTGTGA 558 ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 475 TCAAGAAAGCTACTTTGCGAGTTCAGGAGTTGAAGCAAAGAGGAATAGACTGTGTTGTGA 534 Query 559 TAAGTGTAGGTAAGAAAGGGAATGCTTATTTTAGTCGGAGAGATGAATTTGATGTTGATA 618 | ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 535 TTAGTGTGGGTAAGAAAGGGAATGCGTATTTTAGTCGGAGAGATGAATTCGAAGTTGATA 594 Query 619 AATGTATTGAAGGAGGAGGTGTTTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 678 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 595 AATGTATTGAAGGAGGAGGTGTTTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 654 Query 679 ATGTGTTTTCCTTGTTTGTCAGTGAAGAGGTTGATAAAGTTGAGCTTGTTTACACAAAGT 738 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 655 ATGTCTTTTCCTTGTTTGTCAGTGAAGAAGTTGATAAAGTTGAGCTTGTTTACACAAAGT 714 Query 739 TTGTGTCTTTGGTGAAATCTGATCCTGTGATCCACACTCTGTTGCCTTTGTCGATGAAAG 798 ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| Sbjct 715 TTGTGTCTTTGGTGAAATCTGATCCTGTGGTTCACACTCTGTTGCCTTTGTCTATGAAAG 774 Query 799 GAGAGTCTTGTGATGTGAAAGGTGAGTGTGTTGATGCTATCGAGGATGAGATGTTTAGGC 858 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 775 GAGAGTCTTGTGATGTGAAAGGAGAGTGTGTTGATGCTATGGAGGATGAGATGTTTAGGC 834 Query 859 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 894 Query 919 AGATCTCACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 978 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 AGATATCACCATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 954 Query 979 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTG 1038 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 955 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCG 1014 Query 1039 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1074 Query 1099 TGACGATGGCTTATAACCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1158 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 TGACAATGGCTTATAATCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1134 Query 1159 TGGCTGGAGCAGAAGCTCTTCGAGAGTCTTAGGTAGAAAC 1198 ||||||||||||| |||||||||||||||||| ||||||| Sbjct 1135 TGGCTGGAGCAGAGGCTCTTCGAGAGTCTTAGTTAGAAAC 1174 > Ahg943235 jgi|Araly1|943235|scaffold_603779.1 Length=1208 Score = 250 bits (135), Expect = 2e-65 Identities = 419/550 (76%), Gaps = 44/550 (8%) Strand=Plus/Plus Query 641 TTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTGTTTTCCT-TGTTTGTCA 699 ||| || ||| ||||||||||||||| | | || |||||||| || | || ||||| | | Sbjct 622 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 680 Query 700 GTGAAGAGGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 758 | ||||| || |||||||| |||| | || ||||||||||||||||||||||| ||||| Sbjct 681 GCGAAGAAGTCGATAAAGTCGAGC-TCTTGTACACAAAGTTTGTGTCTTTGGTCAAATCA 739 Query 759 GATCCTGTGATCCACACTCTGTTGCCTTTGTCGA--TGAAAGGAGAG-TCTTGTGATGTG 815 || || ||||||||||| || |||||| | || | | ||||||||| || ||||| | Sbjct 740 GAACCCGTGATCCACACGCTATTGCCTCTATC-ACCT-AAAGGAGAGATC-TGTGACATT 796 Query 816 AAAGGTGA-GTGTGTTGATGCTATC-GAGGATGAGA-TGTTTAGGCTAACGAGC-AAA-G 870 || || || |||||||||||| | || ||||| | |||| |||||||||| | ||| | Sbjct 797 AATGG-GACCTGTGTTGATGCT-GCGGAAGATGA-ATTGTTCAGGCTAACGA-CGAAAGG 852 Query 871 ATGGGAAGTTAG-CTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATCT 924 | ||||| || | | || |||| || || ||| || || | | | |||| ||| Sbjct 853 A-GGGAAATT-GACGGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCT 905 Query 925 CACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGT 984 | ||| | |||| || ||||||||||||||||||||||||||||| || ||||| ||| Sbjct 906 CGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGT 965 Query 985 ATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTGC-GTCG 1043 |||| |||||||||||||| || ||| | ||||| || || || ||||||||||| | | Sbjct 966 ATCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CT 1024 Query 1044 AGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TG 1100 || |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || | Sbjct 1025 AGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTTAAGAA-A-TCGCTT 1081 Query 1101 ACGATGGCT-TATAACCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTG 1158 | |||| | ||||| || | | || |||||||| ||||| ||| || || ||||||| Sbjct 1082 TCCATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTG 1139 Query 1159 TGGCTGGAGC 1168 | |||||||| Sbjct 1140 TTGCTGGAGC 1149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46700573325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5