BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15710.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920474 jgi|Araly1|920474|scaffold_101755.1 1720 0.0
> Ahg920474 jgi|Araly1|920474|scaffold_101755.1
Length=1106
Score = 1720 bits (931), Expect = 0.0
Identities = 1029/1078 (95%), Gaps = 0/1078 (0%)
Strand=Plus/Plus
Query 128 CTCAATCAACACTACTCACAATGCTACTCCATTTCTCTCCGGCGAAACCCCTCATTTCTC 187
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 5 CTCAATAAACACTACTCACAATGCTACTCCATTTCTCTCCGGCGAAACCCCTAATTTCTC 64
Query 188 CACCCAATCTCCGCCGCAATTCACCCACATTCCTCATTTCCCCGCCGCGATCTCTTCGAA 247
||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 65 CACACAATCTCCGCCGCAATTCACCCGCATTCCTCATTTCCCCGCCGCGATCCCTTCGAA 124
Query 248 TTCGAGCAATCGACGCCGCCCAAATCTTCGATTACGAAACCCAACTCAAATCCGAGTACC 307
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 125 TTCGAGCAATCGACGCCGCCCAAATCTTCGATTACGAAACCCAGCTCAAATCCGAGTACC 184
Query 308 GCAAATCCTCTGCTCTCAAAATCGCCGTCTTGGGTTTCGGCAATTTCGGCCAATTCCTCT 367
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 185 GTAAATCCTCTGCTCTCAAAATCGCCGTCTTGGGTTTCGGCAATTTCGGTCAATTCCTCT 244
Query 368 CCAAAACCCTAATTCGACACGGCCACGATCTAATCACTCACTCCCGCTCCGATTACTCCG 427
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 245 CCAAAACCCTAATTCGACACGGCCACGACCTAATCACTCACTCTCGCTCCGATTACTCCG 304
Query 428 ACGCCGCAAACTCAATCGGAGCTCGTTTCTTCGATAACCCTCACGATCTCTGTGAACAAC 487
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 305 ACGCCGCTAACTCAATCGGAGCTCGTTTCTTCGGTAACCCTCACGATCTCTGCGAACAAC 364
Query 488 ATCCCGACGTTGTCCTCCTCTGTACCTCAATCCTCTCCACAGAATCAGTCCTCAGATCAT 547
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 365 ATCCCGACGTTGTCCTCCTCTGCACTTCAATCCTCTCCACAGAATCAGTCCTCAGATCCT 424
Query 548 TCCCTTTCCAACGTCTCCGTCGTAGCACACTCTTCGTCGATGTTCTCTCCGTTAAGGAAT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 TCCCTTTCCAACGTCTCCGTCGTAGCACACTCTTCGTCGATGTTCTCTCCGTTAAAGAAT 484
Query 608 TCCCAAAAGCCCTCTTCATTAAATACCTTCCTAAGGAGTTTGACATTCTCTGTACTCATC 667
||||||||||||||||| | |||||||| || || ||||| ||||||||||| |||||||
Sbjct 485 TCCCAAAAGCCCTCTTCCTCAAATACCTCCCCAAAGAGTTCGACATTCTCTGCACTCATC 544
Query 668 CAATGTTTGGACCTGAGAGTGGTAAGCATTCTTGGTCTGGCTTGCCCTTTGTCTACGATA 727
||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 545 CAATGTTTGGACCCGAGAGTGGTAAGCATTCTTGGTCTGGCTTACCCTTTGTTTATGATA 604
Query 728 AGGTGAGAATCGGAGACGCAGCTTCAAGACAAGAGAGGTGTGAGAAGTTTCTAAGAATTT 787
||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 605 AGGTGAGAATCGGAGACACAGCTTCTAGACACGAGAGGTGTGAGAAGTTTCTAAGAGTTT 664
Query 788 TTGAGAATGAAGGTTGCAAGATGGTTGAAATGAGCTGTGAGAAGCATGATTATTACGCAG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTGAGAATGAAGGTTGCAAGATGGTTGAAATGAGCTGTGAGAAGCATGATTATTACGCAG 724
Query 848 CTGGATCGCAATTCGTGACGCATACTATGGGAAGGGTTTTGGAGAAATATGGAGTTGAGT 907
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 725 CTGGGTCGCAATTCGTGACGCATACTATGGGAAGGGTTTTGGAGAAATACGGAGTTGAGT 784
Query 908 CTTCGCCGATTAACACCAAAGGTTATGAGACGTTGTTGGATTTGGTGGAGAACACATCGA 967
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTTCTCCGATTAACACTAAAGGTTATGAGACGTTGTTGGATTTGGTGGAGAACACATCGA 844
Query 968 GTGATAGCTTTGAGCTTTTCTACGGTTTGTTTATGTATAATCCGAATGCTCTTGAACAGT 1027
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 845 GTGATAGCTTTGAGCTTTTCTATGGTTTGTTTATGTATAACCCGAATGCTCTTGAAGAGT 904
Query 1028 TGGAGAGATTGGATATGGCTTTTGAGTCTGTTAAGAAGGAGCTGTTTGGGAGATTACATC 1087
| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||
Sbjct 905 TAGAGAGATTGGATATGGCTTTTGAATCTGTCAAGAAGGAGTTGTTTGGGAGATTGCATC 964
Query 1088 AGCAATACAGGAAGCAAATGTTTGGTGGGGAGGTTCAATCGCCCAAGAAAACTGAGCAGA 1147
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 965 AGCAATACAGGAAGCAAATGTTTGGTGGGGAGGTTCAATCGCCAAAGAAAACTGAGCAGA 1024
Query 1148 AATTGCTCAATGATGGTGGTGTTGTTCCTATGAATGATATatcatcatcatcatcatc 1205
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1025 AATTGCTTAACGATGGTGGTGTTGTTCCGATGAAAGATATATCATCATCATCATCATC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5