BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15720.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471767 jgi|Araly1|471767|fgenesh2_kg.1__1721__AT1G15720.1 948 0.0
> Ahg471767 jgi|Araly1|471767|fgenesh2_kg.1__1721__AT1G15720.1
Length=1159
Score = 948 bits (513), Expect = 0.0
Identities = 602/645 (93%), Gaps = 6/645 (1%)
Strand=Plus/Plus
Query 72 TGATCGCGGGTTTTCGCATCTTTTACTTGCAAAGTCTT-GG-AAATGGAAGTGATGGACA 129
|||||||||||||| || ||||||||||||||||| || || |||||||||||||||| |
Sbjct 1 TGATCGCGGGTTTTTGCGTCTTTTACTTGCAAAGT-TTCGGAAAATGGAAGTGATGGATA 59
Query 130 AATGGGTAGCTGAATTTTTCCTCCGACGCCAACTAAATCCTAGGGTTTACGCTTTTCCAC 189
||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| |
Sbjct 60 AATGGGTAGCTGAATTTTTCCTCCGTCGCCTACAAAATCCTAGGGTTTACGCTTCTCCTC 119
Query 190 TGTTATCGGCTCTGAAACCAGTAGATTCCGACGACTGTGTAAAACTCAAGCTAACTGCTG 249
|||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||
Sbjct 120 TGTTATCGGCTCTGAAACCAGTAGATTCTGACGACTGTCTAAAGCTCAAGGTAACTGCTG 179
Query 250 TTTTGCGGGATATCTCCAATTCCATGATTCAAGGTACCGTAGACGAAGGAATGCTTGATC 309
||||||| || |||||||||||| |||||| |||||| || |||||||||||||||||||
Sbjct 180 TTTTGCGAGACATCTCCAATTCCTTGATTCGAGGTACGGTCGACGAAGGAATGCTTGATC 239
Query 310 TCCTCGAAATTCTTGAGAAGCTTCTGTTACAGGAACATTCGGTTATCATGGGATCTCTCA 369
||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 240 TCCTCGAGATTCTTGAGAAGCTTCTGTTGGAGGAACATTCGGTTATCATGGGGTCTCTCA 299
Query 370 AATCTGCGTATTGCTGGACTGCTGTGGAATGCACGCTTAGGTTTATGTGGCCAGTGAATG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 AATCTGCGTATTGCTGGACTGCTGTGGAATGCACGCTTAGGTTTATGTGGCCAGTGACTG 359
Query 430 CTTCGGATGGCTTCTTCGGTGATGCCCTTGAGAGGATTTGGAGGAATCGGATTGGGACAT 489
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTCGGATGGCTTCTTCGGCGACGCCCTTGAGAGGATTTGGAGGAATCGGATTGGGACAT 419
Query 490 TGAAGGAGAAAGAGAGCGACTTGGTGACTCGTGAGTTGTTGAAATGGGAGAGTGATCTAA 549
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAAGGAGAGGGAGAGCGATTTGGTGACTCGTGAGTTGTTGAAATGGGAGAGTGATCTAA 479
Query 550 ACAAGGCGTTTGAGGAACCTGAGATTTACCAGAAGATTCGTGAGACTAA-C-A-TCAGGT 606
|||||||||||||| |||||||||||||||||||||||||||||| | | | | ||||||
Sbjct 480 ACAAGGCGTTTGAGAAACCTGAGATTTACCAGAAGATTCGTGAGAGTGATCTAATCAGGT 539
Query 607 ACAATGCCATCTCTCATCTTAATCAGCTTCTCAAAGAGCAGTGGGCACTACTTGGATGTT 666
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 ACAATGCCATCTCTCATCTCAATCAGCTTCTCAAAGAGCAGTGGGCACTACTTGGGTGTT 599
Query 667 CTTCTCTTGAATCAGAAGCTCGAAAGAGGTTTCTTAAGCGTAAGG 711
| ||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 600 CCTCTCTTGAATCAGTAGCTCAAAAGAGGTTTCTTAAGCGCAAGG 644
Score = 732 bits (396), Expect = 0.0
Identities = 455/484 (94%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 804 AAGGTGAATGAACATGAACAGGAACACGAGCCAAGTCTTAATAAGGGGGAAATGTTGGTA 863
||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 641 AAGGTGAATCAACAAGAACAGGAACATGAGCCAAGTCTTAATAAGGGGGACATGTTGGTA 700
Query 864 GCTCGAGAGCTTAAGGATTTTTTGTTGGAGATTCAAAGACTCATCGACCCTATA-ACAAG 922
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 701 GCTCGAGAGCTTAAGGATTTTTTGTTGGAGATTCAAAGACTCATCGACCCT-TCCACTAG 759
Query 923 GCAAGATCAAGAACCTAACAATGCAATGGAGCATTCAGTTGATGTCACTCCTCAGCCTGA 982
|||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 760 GCAAGATCAAGAACATGACAATGCAATGGATCAGTCAGTTGATGTCACTCCTCAGCCTGA 819
Query 983 TGGGGCAAATAGGACTGATGCAGAAGATAGTGAGGGAACATCATCGTCTAGAAGAGTCAG 1042
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
Sbjct 820 TGGGGCAAATAGGACCGAAGCAGAAGATAGTGAGGGAACATTATCGTCTAGAAGAGTCCG 879
Query 1043 GCCTCATCTACCAACCCCGGAACCTCTGAATGTATCACCGTTGAAGAAAGGAAGATTAGA 1102
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 880 GCCTCATCTACCAACCCCGGAACCTCTGAATGTATCACCACTGAAGAAAGGAAGATTGGA 939
Query 1103 AAGACCGCGTCCCAGAAGGCCAATGAAATTCTGGACTTCTGAAGAAGTGGCAGCTTTGAG 1162
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 940 TAGACCGCGTCCTAGAAGGCCAATGAAATTCTGGACTCCTGAAGAAGTGGCAGCTTTGAG 999
Query 1163 GGAAGGAGTTAAAGAATATGGAAAATCATGGAAAGATATCAAGAATTCATACCCTGTTGT 1222
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1000 GGAAGGAGTGAAAGAGTATGGAAAATCATGGAAAGATATCAAGAATTCAAACCCTGTTGT 1059
Query 1223 TTTCGCTGATAGGAGCGAGGTGGATTTGAAGGATAAGTGGAGGAATTTACTTGGTCGTCA 1282
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1060 TTTGGCTGATAGGAGTGAGGTGGATTTGAAGGATAAGTGGAGGAATTTATTTGGTCGGCA 1119
Query 1283 GTAG 1286
||||
Sbjct 1120 GTAG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5