BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15730.1 Length=1531 Score E Sequences producing significant alignments: (Bits) Value Ahg920476 jgi|Araly1|920476|scaffold_101757.1 2063 0.0 Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 987 0.0 > Ahg920476 jgi|Araly1|920476|scaffold_101757.1 Length=1382 Score = 2063 bits (1117), Expect = 0.0 Identities = 1304/1393 (94%), Gaps = 17/1393 (1%) Strand=Plus/Plus Query 31 TACCTT-GAACCCTAATAACAATGGCGACGCTGTTGAAACTCGACATAGCCACGACTTTC 89 |||||| ||||||||||||||||||||||| ||| | |||||| | ||||||||||||| Sbjct 1 TACCTTAAAACCCTAATAACAATGGCGACGCAGTTCAGACTCGATACAGCCACGACTTTC 60 Query 90 CTTGCTTTCATCGTTCCCCGAGCTAATACCTCCTTGAACCATCGGTTCGCTTCTGCTAGG 149 |||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||| Sbjct 61 CTTGCTTTCAACGTTCCCCGAGCTAATATCTCGTTGAACCACCGGTTCGCTTCTGCTAGG 120 Query 150 CTCAGTACAGCCACAGTTTCCCTCAGAACGAAGTCGTCATCGTTCTATTCCGCGGCGCTT 209 ||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||| || Sbjct 121 CTCAGGAGAGCCACAGTTTCCCTCAGAACGAAGCCGTCGTCGTTCTATTCCGCGGCGGTT 180 Query 210 TACTCTGACAGCCGTCGGAGATTCCACTCCGCCGTTGCCTCTGATTCCTCGCTCGCCGTT 269 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 181 TACTCTGACAGCCGTCGGAGATTCCAATCCGCCGTTGCCTATGATTCCTCGCTCGCCGTT 240 Query 270 GTAGATGA-TGAAGATAT-CTTCGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTC 327 | ||| | ||| ||| | |||||||||| ||| ||||| ||||| ||||||||||||| Sbjct 241 ATGGAT-ACTGATGAT-TCCTTCGATGTTTCCACTGAGAATTTGCAGGACAATCGAATTC 298 Query 328 CGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGACAACATTGCTAAACCATATAT 387 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 299 CGGCCACTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATAT 358 Query 388 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACA 447 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 359 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACA 418 Query 448 TTGATGGATCACTTGTGGCAGCTCAAACTGCGGGAGCGGAGGATATAATGATGCTTAACA 507 |||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| Sbjct 419 TTGATGGATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACA 478 Query 508 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCC 567 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 479 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTC 538 Query 568 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTG 627 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 539 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTG 598 Query 628 CTCCGATTATTCAAACTTTCTATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATG 687 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 599 CCCCGATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATG 658 Query 688 GGGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 747 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GAGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 718 Query 748 AAGGCTATGTCAATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACA 807 ||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| Sbjct 719 AAGGCTATGTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACA 778 Query 808 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 838 Query 868 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 898 Query 928 GAATTGGAGGGTTTGATCTAGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAG 987 ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || | Sbjct 899 GAATTGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACGAGG 958 Query 988 ATCGCGAGGGTCATGA---TGATCATCACCATGGTCATGACTGCCATGATCACCACAATG 1044 || || | |||| | ||| ||| |||||||||||||||||||||||||| |||||| Sbjct 959 GTCATGATGATCATCACCATGAACATGACCATGGTCATGACTGCCATGATCACAACAATG 1018 Query 1045 AGCATGAGCATGAGCATGAACACGAGCATCACCATTCTCATGATCACACCCATGACCCTG 1104 ||||||| | |||||||||||||| | | |||||||||||||||| |||||||||| Sbjct 1019 AGCATGA---T---CATGAACACGAGCA-C-C-ATTCTCATGATCACACTCATGACCCTG 1069 Query 1105 GTGTTGGTTCAGTCAGTATAGTTTGCGAAGGAGACTTAGACCTCGAGAAGGCTAACATGT 1164 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1070 GTGTTGCTTCAGTCAGTATAGTTTGCGAAGGAGATTTAGACCTCGAGAAGGCTAACATGT 1129 Query 1165 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1189 Query 1225 CCGTACAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1284 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 CCGTCCAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1249 Query 1285 CACCTGACCGGTTATGGAGAAAAGATGAAACAAGAACCAACAAGATTGTTTTCATCGGCA 1344 |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1250 CACCAGACCGGTTATGGAGAAAAGATGAGACAAGAACCAACAAGATCGTTTTCATCGGCA 1309 Query 1345 AGAATTTGAACCGGGAGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGATTATAGG 1404 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1310 AGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATTATAGG 1369 Query 1405 ACCAAATATTTAA 1417 | ||||||| ||| Sbjct 1370 AACAAATATATAA 1382 > Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 Length=1362 Score = 987 bits (534), Expect = 0.0 Identities = 930/1119 (83%), Gaps = 35/1119 (3%) Strand=Plus/Plus Query 290 CGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTCCGGCCACTATAATCACCGGGTT 349 ||||||| ||| | |||| | | || || || |||||||| ||||| ||||| ||||| Sbjct 248 CGATGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTT 307 Query 350 CCTGGGCTCTGGTAAGACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCG 409 ||||||| || |||||||||||||| || |||||| |||| |||||||||||||||| Sbjct 308 TTTGGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCG 367 Query 410 CATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACATTGATGGATCACTTGTGGCAGC 469 |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || | Sbjct 368 AATAGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTC 427 Query 470 TCAAA-CTGCGGGAGCGGAGGATATAATGATGCTTAACAATGGCTGTCTGTGTTGTACTG 528 | ||| || ||||| |||||||| | ||||| ||||||||||| || ||||| |||| Sbjct 428 T-AAATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTG 486 Query 529 TTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCCAGACCAAGAAAGGAAGGTTCG 588 |||||||||||||||| ||||||||| ||| | ||| | ||||||||||||| ||||| Sbjct 487 TTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCG 546 Query 589 ACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTGCTCCGATTATTCAAA-CTTTC 647 ||||||| || |||||||| ||||||||||| ||||| || |||||||| |||| |||| Sbjct 547 ACCATATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTT- 605 Query 648 TATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATGGGGTTGTCACTCTGGTTGAT 707 ||||| ||||| |||||||||||| ||||||| |||||||| ||||| ||||| |||||| Sbjct 606 TATGCCGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGAT 665 Query 708 GCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGCTAT-GTCAATGAGGC 766 ||||| |||||||||||||||||||||||||||||||| | || | | ||||||||||| Sbjct 666 GCTAAGCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGC 724 Query 767 GGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGACTGATCTTGTTGGTGA 826 ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct 725 TGTTGAACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGA 784 Query 827 GCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAGCATGGCTCACATGAA 886 | | ||| ||| ||| ||| |||| || |||||||| ||||||||||||||||| |||| Sbjct 785 GGCGGAATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGAC 844 Query 887 GCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAATTGGAGGGTTTGATCT 946 |||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| Sbjct 845 GCGGACAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCT 904 Query 947 AGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAGATCGCGAGGGTCATGATGA 1006 ||| |||||||||||||||||||||||||| || || | ||||| | | | ||| || Sbjct 905 AGAGAGAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATCACCATGATCACGAC-- 962 Query 1007 TCATCACCATGGTCATGACTGCCATGATCACCA-CAATGA-GCATGAGCATGAGCATGAA 1064 ||| |||| | |||||| | | || ||||| || | | |||| ||||||||| Sbjct 963 -CATGACCACGACCATGAC--C-ACGACCACCATCACC-ACG-ATGAACATGAGCAT--- 1013 Query 1065 CACGAGCATCACCATTCTCATGATCACACCCATGACCCTGGTGTTGGTTCAGTCAGTATA 1124 ||| | |||| |||||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 1014 CAC-A--ATCA---TTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATA 1067 Query 1125 GTTTGCGAAGGA-GACTTAGACCTCGAGAAGGCTAACATGTGGCTTGGGGCGCTATTG-T 1182 |||||| ||||| | ||||||||| |||||||| ||||||||||| ||| || || || | Sbjct 1068 GTTTGCCAAGGAAG-CTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGAT 1126 Query 1183 ACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCTCCGTACAAGAC-ATGGAC 1241 |||| ||||| || |||||||||||||||||| ||||||| || || || ||||| Sbjct 1127 GG-AACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCAC-ACCATGGAG 1184 Query 1242 GAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGATCACCTGACCGGTTATGG 1301 |||||||| |||||||| ||||| ||||| |||||| |||||||||| |||||||||||| Sbjct 1185 GAGAGATTTGTGTTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGG 1244 Query 1302 AGAA-AAGATGAA-ACAAGAACCAACAAGATTGTTTTCATCGGCAAGAATTTGAACCGGG 1359 ||| || | || | | || |||||||| || ||||| || |||||||||||| ||| Sbjct 1245 GGAAGAA-ACGAGGAGA-GAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGG 1302 Query 1360 AGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGAT 1398 ||||||| |||| |||||| | ||||||||||||||||| Sbjct 1303 AGGAGTTGGAGAAGGGTTTTAAAGCTTGCTTGATTTGAT 1341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57325818725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5