BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15730.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920476 jgi|Araly1|920476|scaffold_101757.1 2063 0.0
Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 987 0.0
> Ahg920476 jgi|Araly1|920476|scaffold_101757.1
Length=1382
Score = 2063 bits (1117), Expect = 0.0
Identities = 1304/1393 (94%), Gaps = 17/1393 (1%)
Strand=Plus/Plus
Query 31 TACCTT-GAACCCTAATAACAATGGCGACGCTGTTGAAACTCGACATAGCCACGACTTTC 89
|||||| ||||||||||||||||||||||| ||| | |||||| | |||||||||||||
Sbjct 1 TACCTTAAAACCCTAATAACAATGGCGACGCAGTTCAGACTCGATACAGCCACGACTTTC 60
Query 90 CTTGCTTTCATCGTTCCCCGAGCTAATACCTCCTTGAACCATCGGTTCGCTTCTGCTAGG 149
|||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 61 CTTGCTTTCAACGTTCCCCGAGCTAATATCTCGTTGAACCACCGGTTCGCTTCTGCTAGG 120
Query 150 CTCAGTACAGCCACAGTTTCCCTCAGAACGAAGTCGTCATCGTTCTATTCCGCGGCGCTT 209
||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 121 CTCAGGAGAGCCACAGTTTCCCTCAGAACGAAGCCGTCGTCGTTCTATTCCGCGGCGGTT 180
Query 210 TACTCTGACAGCCGTCGGAGATTCCACTCCGCCGTTGCCTCTGATTCCTCGCTCGCCGTT 269
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 181 TACTCTGACAGCCGTCGGAGATTCCAATCCGCCGTTGCCTATGATTCCTCGCTCGCCGTT 240
Query 270 GTAGATGA-TGAAGATAT-CTTCGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTC 327
| ||| | ||| ||| | |||||||||| ||| ||||| ||||| |||||||||||||
Sbjct 241 ATGGAT-ACTGATGAT-TCCTTCGATGTTTCCACTGAGAATTTGCAGGACAATCGAATTC 298
Query 328 CGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGACAACATTGCTAAACCATATAT 387
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 299 CGGCCACTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATAT 358
Query 388 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACA 447
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACA 418
Query 448 TTGATGGATCACTTGTGGCAGCTCAAACTGCGGGAGCGGAGGATATAATGATGCTTAACA 507
|||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 419 TTGATGGATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACA 478
Query 508 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCC 567
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 479 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTC 538
Query 568 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTG 627
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTG 598
Query 628 CTCCGATTATTCAAACTTTCTATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATG 687
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CCCCGATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATG 658
Query 688 GGGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 747
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 718
Query 748 AAGGCTATGTCAATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACA 807
||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 719 AAGGCTATGTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACA 778
Query 808 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 838
Query 868 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 898
Query 928 GAATTGGAGGGTTTGATCTAGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAG 987
||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || |
Sbjct 899 GAATTGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACGAGG 958
Query 988 ATCGCGAGGGTCATGA---TGATCATCACCATGGTCATGACTGCCATGATCACCACAATG 1044
|| || | |||| | ||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 959 GTCATGATGATCATCACCATGAACATGACCATGGTCATGACTGCCATGATCACAACAATG 1018
Query 1045 AGCATGAGCATGAGCATGAACACGAGCATCACCATTCTCATGATCACACCCATGACCCTG 1104
||||||| | |||||||||||||| | | |||||||||||||||| ||||||||||
Sbjct 1019 AGCATGA---T---CATGAACACGAGCA-C-C-ATTCTCATGATCACACTCATGACCCTG 1069
Query 1105 GTGTTGGTTCAGTCAGTATAGTTTGCGAAGGAGACTTAGACCTCGAGAAGGCTAACATGT 1164
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1070 GTGTTGCTTCAGTCAGTATAGTTTGCGAAGGAGATTTAGACCTCGAGAAGGCTAACATGT 1129
Query 1165 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1189
Query 1225 CCGTACAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1284
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCGTCCAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1249
Query 1285 CACCTGACCGGTTATGGAGAAAAGATGAAACAAGAACCAACAAGATTGTTTTCATCGGCA 1344
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1250 CACCAGACCGGTTATGGAGAAAAGATGAGACAAGAACCAACAAGATCGTTTTCATCGGCA 1309
Query 1345 AGAATTTGAACCGGGAGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGATTATAGG 1404
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1310 AGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATTATAGG 1369
Query 1405 ACCAAATATTTAA 1417
| ||||||| |||
Sbjct 1370 AACAAATATATAA 1382
> Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1
Length=1362
Score = 987 bits (534), Expect = 0.0
Identities = 930/1119 (83%), Gaps = 35/1119 (3%)
Strand=Plus/Plus
Query 290 CGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTCCGGCCACTATAATCACCGGGTT 349
||||||| ||| | |||| | | || || || |||||||| ||||| ||||| |||||
Sbjct 248 CGATGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTT 307
Query 350 CCTGGGCTCTGGTAAGACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCG 409
||||||| || |||||||||||||| || |||||| |||| ||||||||||||||||
Sbjct 308 TTTGGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCG 367
Query 410 CATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACATTGATGGATCACTTGTGGCAGC 469
|||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 368 AATAGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTC 427
Query 470 TCAAA-CTGCGGGAGCGGAGGATATAATGATGCTTAACAATGGCTGTCTGTGTTGTACTG 528
| ||| || ||||| |||||||| | ||||| ||||||||||| || ||||| ||||
Sbjct 428 T-AAATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTG 486
Query 529 TTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCCAGACCAAGAAAGGAAGGTTCG 588
|||||||||||||||| ||||||||| ||| | ||| | ||||||||||||| |||||
Sbjct 487 TTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCG 546
Query 589 ACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTGCTCCGATTATTCAAA-CTTTC 647
||||||| || |||||||| ||||||||||| ||||| || |||||||| |||| ||||
Sbjct 547 ACCATATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTT- 605
Query 648 TATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATGGGGTTGTCACTCTGGTTGAT 707
||||| ||||| |||||||||||| ||||||| |||||||| ||||| ||||| ||||||
Sbjct 606 TATGCCGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGAT 665
Query 708 GCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGCTAT-GTCAATGAGGC 766
||||| |||||||||||||||||||||||||||||||| | || | | |||||||||||
Sbjct 666 GCTAAGCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGC 724
Query 767 GGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGACTGATCTTGTTGGTGA 826
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 725 TGTTGAACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGA 784
Query 827 GCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAGCATGGCTCACATGAA 886
| | ||| ||| ||| ||| |||| || |||||||| ||||||||||||||||| ||||
Sbjct 785 GGCGGAATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGAC 844
Query 887 GCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAATTGGAGGGTTTGATCT 946
|||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 845 GCGGACAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCT 904
Query 947 AGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAGATCGCGAGGGTCATGATGA 1006
||| |||||||||||||||||||||||||| || || | ||||| | | | ||| ||
Sbjct 905 AGAGAGAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATCACCATGATCACGAC-- 962
Query 1007 TCATCACCATGGTCATGACTGCCATGATCACCA-CAATGA-GCATGAGCATGAGCATGAA 1064
||| |||| | |||||| | | || ||||| || | | |||| |||||||||
Sbjct 963 -CATGACCACGACCATGAC--C-ACGACCACCATCACC-ACG-ATGAACATGAGCAT--- 1013
Query 1065 CACGAGCATCACCATTCTCATGATCACACCCATGACCCTGGTGTTGGTTCAGTCAGTATA 1124
||| | |||| |||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 1014 CAC-A--ATCA---TTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATA 1067
Query 1125 GTTTGCGAAGGA-GACTTAGACCTCGAGAAGGCTAACATGTGGCTTGGGGCGCTATTG-T 1182
|||||| ||||| | ||||||||| |||||||| ||||||||||| ||| || || || |
Sbjct 1068 GTTTGCCAAGGAAG-CTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGAT 1126
Query 1183 ACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCTCCGTACAAGAC-ATGGAC 1241
|||| ||||| || |||||||||||||||||| ||||||| || || || |||||
Sbjct 1127 GG-AACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCAC-ACCATGGAG 1184
Query 1242 GAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGATCACCTGACCGGTTATGG 1301
|||||||| |||||||| ||||| ||||| |||||| |||||||||| ||||||||||||
Sbjct 1185 GAGAGATTTGTGTTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGG 1244
Query 1302 AGAA-AAGATGAA-ACAAGAACCAACAAGATTGTTTTCATCGGCAAGAATTTGAACCGGG 1359
||| || | || | | || |||||||| || ||||| || |||||||||||| |||
Sbjct 1245 GGAAGAA-ACGAGGAGA-GAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGG 1302
Query 1360 AGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGAT 1398
||||||| |||| |||||| | |||||||||||||||||
Sbjct 1303 AGGAGTTGGAGAAGGGTTTTAAAGCTTGCTTGATTTGAT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5