BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15757.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911380 jgi|Araly1|911380|Al_scaffold_0001_1634 350 3e-96
> Ahg911380 jgi|Araly1|911380|Al_scaffold_0001_1634
Length=252
Score = 350 bits (189), Expect = 3e-96
Identities = 233/254 (92%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATCACCAAAAAGAATTTGATAGCATTTGTTTTCACCATTCT-CTTTGTTATATC 59
||||||||||| |||||||||||||||||||||||| || ||||||| | ||||||||||
Sbjct 1 ATGGCTATCACTAAAAAGAATTTGATAGCATTTGTTCTCGCCATTCTGC-TTGTTATATC 59
Query 60 TTATGTTCATTGTCGTTCAACATCTGATATCGTTTCTGGTTCTGGAATAAAAGAGGATGA 119
|||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 60 TTATGTTCATTGTCGTACAACATCTGATATTGTTTCTGGTTTTGGAATAAAAGAGGATGA 119
Query 120 ACATGTATGCTTCAAAACAAGTCCGTGTTTGCCTGAAGTCGGAGGGGAAAAAGGCTGCAT 179
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TCATGTATGCTTCAATACAAGTCCGTGTTTGCCTGAACAAGGAGGGGAAAAAGGCTGCAT 179
Query 180 TGCGTTTTGTTCAAGA-ATGAAGTTTACAACAGGCCTTTGTCTTGGTTCCGTAGTATGTT 238
|||||||||| ||||| | ||||||||||||||||| ||||||| ||||| | ||||||
Sbjct 180 TGCGTTTTGTACAAGACA-GAAGTTTACAACAGGCCATTGTCTTAATTCCGAATTATGTT 238
Query 239 GTTGTTACACTTAA 252
||||||||||||||
Sbjct 239 GTTGTTACACTTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5