BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15760.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471774 jgi|Araly1|471774|fgenesh2_kg.1__1728__AT1G15760.1 887 0.0
> Ahg471774 jgi|Araly1|471774|fgenesh2_kg.1__1728__AT1G15760.1
Length=597
Score = 887 bits (480), Expect = 0.0
Identities = 573/614 (93%), Gaps = 22/614 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCTAGAACAAACCTTGAACCTTCTCTCATCCAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCAC 60
Query 61 GAATACGGCCTCTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCGAC 120
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAATACGGTCTTTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAAC 120
Query 121 CACGAATTTCTCCAGAGCATGGGAATCTCTATCGCCAAACACCGTCTCGAGATTCTCAAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CACGAATTTCTCCAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAA 180
Query 181 CTCGCTCGTCGAGATCGCAAGAACTCTCCTCCTCTCACCTCTCGTTCCATCTCCAGAGTC 240
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 181 CTCGCTCGTCGAGATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATC 240
Query 241 GTGACTGCGATTAAGAAAACCAGG-AAATGTTTATCCGATCACGTACGCGCCTGGATCCG 299
||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||
Sbjct 241 GTGGTTGCGATTAAGAATACC-GGTAAATGTTTCTCCGATCACGTACGCGCCTGGATCCG 299
Query 300 CCGTGAAGAAGAGTCGGCGTCGTCTCGAGCTCTGGTGTTGGTGCCGAAGAAGACTAGCA- 358
||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 CCGTGAAGAAGAGGAGTCGTCGTCTCGAGCTCTGGTGTTAGTGCCGAAGAAGACTAGCAG 359
Query 359 -A-CGGGATTGGGAAGTGGAGAGGTGGATTCCTGAAGAGGAACAAGAGATCTGTGATGCC 416
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CAGCGGGATTGGGAAGTGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTGTGATGCC 419
Query 417 GAGCAATGGAAATGGTGGATTGGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 476
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCAATGGAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 479
Query 477 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 539
Query 537 ACTTTAC-GCTCAAGATACTTATTTTGAAGATATCAAATGGGATTCAATGTTTCAGAATC 595
||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 540 ACTTT-CTGCTCAAGATAC---------------CAAATGGGATTCAATGTTTCAGAATC 583
Query 596 TCAAACCTACTTAG 609
||||||||||||||
Sbjct 584 TCAAACCTACTTAG 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5