BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15770.1 Length=947 Score E Sequences producing significant alignments: (Bits) Value Ahg471775 jgi|Araly1|471775|fgenesh2_kg.1__1729__AT1G15770.1 732 0.0 Ahg471776 jgi|Araly1|471776|fgenesh2_kg.1__1730__AT1G15780.1 545 2e-154 > Ahg471775 jgi|Araly1|471775|fgenesh2_kg.1__1729__AT1G15770.1 Length=816 Score = 732 bits (396), Expect = 0.0 Identities = 535/599 (89%), Gaps = 22/599 (4%) Strand=Plus/Plus Query 105 AGAGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTT 164 ||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 28 AGAGATCTCAATGAAATCTACCAGATAGTGGTAGCCAAGTTGCAGCAAGAGGATTCTCTT 87 Query 165 TCGCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTG 224 |||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| |||| Sbjct 88 CCGCAGCAGAAACTAAGACCAGATCAGTTTGAGAATTTGAAACGAGGCAAGACAGGGTTG 147 Query 225 GAGGGA-ATGCTACGTTTCCTATCTCTTTCAAAGAGCAATATCAAACCTGACTTGAAGGA 283 || | ||||||| |||||||||||||||||||||||||||||||||| |||||| | Sbjct 148 GA-CAATATGCTACAATTCCTATCTCTTTCAAAGAGCAATATCAAACCTGGCTTGAA-G- 204 Query 284 TAGTATGGATTATCGCAAGAACAACATTATGA-ATTTCTTAAATATGCAGAGTCTGAGGA 342 | | || | | | || ||||| | |||||||||||| |||||||||||| | Sbjct 205 --G-A--GA--A--G---G---AA-ATTAT-AGATTTCTTAAATAAGCAGAGTCTGAGAA 247 Query 343 AGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTAT 402 ||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 248 AGATAGTACAGAAAGGGCAGCTTTCGAAAGCTCAGATTCAGCCTATGCAGCAACCACTAT 307 Query 403 CTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATGA 462 ||||||||||||||||||| ||||||||| | ||||||||| ||||||| |||||||||| Sbjct 308 CTCAGACAGTTCAAGATCAATCTCATGATAATCAAACAACTATGCAGATTCAATCAATGA 367 Query 463 GCATGCAGGGTGCTGGGTCAAGGGTACAACAGATCAGGCAAGGTGTACTTCAATCCCTTG 522 ||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 368 GCAAGCAGGGTGCTGGGTCAAGGACACAACAGATCAAGCAAGGTGTAGTTCAATCCCTTG 427 Query 523 AAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCTTCCGGAGCTTACCAGTCCTGATG 582 |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 428 CAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCTTCAGGAGCTTACTAGTCCTGATG 487 Query 583 GAAATATTATAAATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 642 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 GAAATATTAGATATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 547 Query 643 TTGAACGCCTTATTAGAGCCATGAAATCCATCTCACCACAAGCGCTTTCGTCTGCAGTA 701 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 548 TTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACCACAAGCGCTTTCTTCTGCAGTA 606 > Ahg471776 jgi|Araly1|471776|fgenesh2_kg.1__1730__AT1G15780.1 Length=4169 Score = 545 bits (295), Expect = 2e-154 Identities = 402/452 (89%), Gaps = 13/452 (3%) Strand=Plus/Plus Query 500 GCAAGGTGTACTTCAATCCCTTGAAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT 559 |||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 3021 GCAAGGTGTAGTTCAGTCCCTAGCAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT 3080 Query 560 TCCGGAGCTTACCAGTCCTGATGGAAATATTATAAATCCTTTGACAAGTACTTGTGGAAA 619 || |||| |||| |||||||||||||||||| ||||||||||| ||| ||| | |||||| Sbjct 3081 TCAGGAGTTTACTAGTCCTGATGGAAATATTTTAAATCCTTTGGCAATTACATCTGGAAA 3140 Query 620 ATCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCATGAAATCCATCTCACC 679 | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 3141 ACCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCGTGAAGTCCATCTCACC 3200 Query 680 ACAAGCGCTTTCGTCTGCAGTATGTGATATTAGATCTGTTGTAAGCATGGTTGATAGGAT 739 |||||||||||| ||||||||| |||| || |||| ||||||||||||||||||||||| Sbjct 3201 ACAAGCGCTTTCTTCTGCAGTAAGTGACATCGGATCGGTTGTAAGCATGGTTGATAGGAT 3260 Query 740 TGCTGGTTCAGTACCAGGCAAA-GGTTCAAGAGCTTCATTTGGTGTGGACTTGGTTGCAA 798 |||||||||| |||||| ||| ||||||||||||||| |||||| |||||||||||||| Sbjct 3261 AGCTGGTTCAGCACCAGG-AAACGGTTCAAGAGCTTCAGTTGGTGAGGACTTGGTTGCAA 3319 Query 799 TGACTAAGTGCCATCTCCAAGAAAGAAACTTCATGACGCAAGA-----TG--G-CGACCA 850 |||||||||| | |||||||| ||||||||||||||||||||| || | |||||| Sbjct 3320 TGACTAAGTGTCGTCTCCAAGCAAGAAACTTCATGACGCAAGAGGGAATGATGGCGACCA 3379 Query 851 TGAAAAGGAAGCGTCAGACAACCCCAATGCCA-TCAAGTGTTGCTTCATTGGGAGGAAAG 909 ||||| ||||||||| |||||| |||||||| | |||||||||||| ||||||||| | Sbjct 3380 AGAAAATGAAGCGTCACACAACCGCAATGCCACT-AAGTGTTGCTTCGCTGGGAGGAA-G 3437 Query 910 CGTTGGTAATAGCTACAAGCATTTTGCTGGTT 941 ||||||| ||| ||||||||| |||||||||| Sbjct 3438 CGTTGGTGATAACTACAAGCAGTTTGCTGGTT 3469 Score = 359 bits (194), Expect = 2e-98 Identities = 330/394 (84%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 107 AGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTTTC 166 ||| || |||||||||||||||||||| ||||| |||||||||| | | |||||| ||| Sbjct 1842 AGATCTGAATGAAATCTACCAGAGAGTTGCAGCTAAGTTGCAGC-A-A-GATTCT-GTTC 1897 Query 167 GCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTGGA 226 || ||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||| Sbjct 1898 -CA-CAGCAACAAAGATCAGATCAGTTTGAGAAATTGAAACAATTCAAAACAATGTTGGA 1955 Query 227 GGGAATGCTACG-TTTCCTATCTCTTTCAAAGAGCAATATCAAACCTG-ACTTGAAGGAT 284 | ||||| | | |||| ||||| |||||||||||||||||| || | | || |||||| Sbjct 1956 GCGAATGATTCAATTTC-TATCTGTTTCAAAGAGCAATATCATGCCCGCA-TTAAAGGAT 2013 Query 285 A-GTATGGATTATCGCAAGAA-CAACATTAT-GAATTTCTTAAATATGCAGAGTCTGAGG 341 | | ||| |||| |||| || ||||| | ||||||||||||||| || | |||| Sbjct 2014 AAGG-TGGCTTATTATGAGAAGCAG-ATTATAGG-TTTCTTAAATATGCACAGGCCGAGG 2070 Query 342 AAGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTA 401 ||| |||||||| || ||||||| || ||||| |||| ||||||||||||||||| | | Sbjct 2071 AAGCCAGTACAGCAAGGGCAGCTTCCGCAATCTCAGATGCAGCCTATGCAGCAACCGCAA 2130 Query 402 TCTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATG 461 |||||||||||||||||||| ||||||||| ||||||||| || ||| |||||||||||| Sbjct 2131 TCTCAGACAGTTCAAGATCAATCTCATGATAACCAAACAAATCAGCAAATGCAATCAATG 2190 Query 462 AGCATGCAGGGTGCTGGGTCAAGGGTACAACAGA 495 |||||||||||||||||| |||||| |||||||| Sbjct 2191 AGCATGCAGGGTGCTGGGCCAAGGGCACAACAGA 2224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35149329474 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5