BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15770.1
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471775 jgi|Araly1|471775|fgenesh2_kg.1__1729__AT1G15770.1 732 0.0
Ahg471776 jgi|Araly1|471776|fgenesh2_kg.1__1730__AT1G15780.1 545 2e-154
> Ahg471775 jgi|Araly1|471775|fgenesh2_kg.1__1729__AT1G15770.1
Length=816
Score = 732 bits (396), Expect = 0.0
Identities = 535/599 (89%), Gaps = 22/599 (4%)
Strand=Plus/Plus
Query 105 AGAGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTT 164
||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 28 AGAGATCTCAATGAAATCTACCAGATAGTGGTAGCCAAGTTGCAGCAAGAGGATTCTCTT 87
Query 165 TCGCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTG 224
|||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct 88 CCGCAGCAGAAACTAAGACCAGATCAGTTTGAGAATTTGAAACGAGGCAAGACAGGGTTG 147
Query 225 GAGGGA-ATGCTACGTTTCCTATCTCTTTCAAAGAGCAATATCAAACCTGACTTGAAGGA 283
|| | ||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 148 GA-CAATATGCTACAATTCCTATCTCTTTCAAAGAGCAATATCAAACCTGGCTTGAA-G- 204
Query 284 TAGTATGGATTATCGCAAGAACAACATTATGA-ATTTCTTAAATATGCAGAGTCTGAGGA 342
| | || | | | || ||||| | |||||||||||| |||||||||||| |
Sbjct 205 --G-A--GA--A--G---G---AA-ATTAT-AGATTTCTTAAATAAGCAGAGTCTGAGAA 247
Query 343 AGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTAT 402
||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 248 AGATAGTACAGAAAGGGCAGCTTTCGAAAGCTCAGATTCAGCCTATGCAGCAACCACTAT 307
Query 403 CTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATGA 462
||||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||
Sbjct 308 CTCAGACAGTTCAAGATCAATCTCATGATAATCAAACAACTATGCAGATTCAATCAATGA 367
Query 463 GCATGCAGGGTGCTGGGTCAAGGGTACAACAGATCAGGCAAGGTGTACTTCAATCCCTTG 522
||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 368 GCAAGCAGGGTGCTGGGTCAAGGACACAACAGATCAAGCAAGGTGTAGTTCAATCCCTTG 427
Query 523 AAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCTTCCGGAGCTTACCAGTCCTGATG 582
|||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 428 CAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCTTCAGGAGCTTACTAGTCCTGATG 487
Query 583 GAAATATTATAAATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 642
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GAAATATTAGATATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 547
Query 643 TTGAACGCCTTATTAGAGCCATGAAATCCATCTCACCACAAGCGCTTTCGTCTGCAGTA 701
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 548 TTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACCACAAGCGCTTTCTTCTGCAGTA 606
> Ahg471776 jgi|Araly1|471776|fgenesh2_kg.1__1730__AT1G15780.1
Length=4169
Score = 545 bits (295), Expect = 2e-154
Identities = 402/452 (89%), Gaps = 13/452 (3%)
Strand=Plus/Plus
Query 500 GCAAGGTGTACTTCAATCCCTTGAAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT 559
|||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 3021 GCAAGGTGTAGTTCAGTCCCTAGCAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT 3080
Query 560 TCCGGAGCTTACCAGTCCTGATGGAAATATTATAAATCCTTTGACAAGTACTTGTGGAAA 619
|| |||| |||| |||||||||||||||||| ||||||||||| ||| ||| | ||||||
Sbjct 3081 TCAGGAGTTTACTAGTCCTGATGGAAATATTTTAAATCCTTTGGCAATTACATCTGGAAA 3140
Query 620 ATCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCATGAAATCCATCTCACC 679
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 3141 ACCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCGTGAAGTCCATCTCACC 3200
Query 680 ACAAGCGCTTTCGTCTGCAGTATGTGATATTAGATCTGTTGTAAGCATGGTTGATAGGAT 739
|||||||||||| ||||||||| |||| || |||| |||||||||||||||||||||||
Sbjct 3201 ACAAGCGCTTTCTTCTGCAGTAAGTGACATCGGATCGGTTGTAAGCATGGTTGATAGGAT 3260
Query 740 TGCTGGTTCAGTACCAGGCAAA-GGTTCAAGAGCTTCATTTGGTGTGGACTTGGTTGCAA 798
|||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 3261 AGCTGGTTCAGCACCAGG-AAACGGTTCAAGAGCTTCAGTTGGTGAGGACTTGGTTGCAA 3319
Query 799 TGACTAAGTGCCATCTCCAAGAAAGAAACTTCATGACGCAAGA-----TG--G-CGACCA 850
|||||||||| | |||||||| ||||||||||||||||||||| || | ||||||
Sbjct 3320 TGACTAAGTGTCGTCTCCAAGCAAGAAACTTCATGACGCAAGAGGGAATGATGGCGACCA 3379
Query 851 TGAAAAGGAAGCGTCAGACAACCCCAATGCCA-TCAAGTGTTGCTTCATTGGGAGGAAAG 909
||||| ||||||||| |||||| |||||||| | |||||||||||| ||||||||| |
Sbjct 3380 AGAAAATGAAGCGTCACACAACCGCAATGCCACT-AAGTGTTGCTTCGCTGGGAGGAA-G 3437
Query 910 CGTTGGTAATAGCTACAAGCATTTTGCTGGTT 941
||||||| ||| ||||||||| ||||||||||
Sbjct 3438 CGTTGGTGATAACTACAAGCAGTTTGCTGGTT 3469
Score = 359 bits (194), Expect = 2e-98
Identities = 330/394 (84%), Gaps = 16/394 (4%)
Strand=Plus/Plus
Query 107 AGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTTTC 166
||| || |||||||||||||||||||| ||||| |||||||||| | | |||||| |||
Sbjct 1842 AGATCTGAATGAAATCTACCAGAGAGTTGCAGCTAAGTTGCAGC-A-A-GATTCT-GTTC 1897
Query 167 GCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTGGA 226
|| ||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct 1898 -CA-CAGCAACAAAGATCAGATCAGTTTGAGAAATTGAAACAATTCAAAACAATGTTGGA 1955
Query 227 GGGAATGCTACG-TTTCCTATCTCTTTCAAAGAGCAATATCAAACCTG-ACTTGAAGGAT 284
| ||||| | | |||| ||||| |||||||||||||||||| || | | || ||||||
Sbjct 1956 GCGAATGATTCAATTTC-TATCTGTTTCAAAGAGCAATATCATGCCCGCA-TTAAAGGAT 2013
Query 285 A-GTATGGATTATCGCAAGAA-CAACATTAT-GAATTTCTTAAATATGCAGAGTCTGAGG 341
| | ||| |||| |||| || ||||| | ||||||||||||||| || | ||||
Sbjct 2014 AAGG-TGGCTTATTATGAGAAGCAG-ATTATAGG-TTTCTTAAATATGCACAGGCCGAGG 2070
Query 342 AAGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTA 401
||| |||||||| || ||||||| || ||||| |||| ||||||||||||||||| | |
Sbjct 2071 AAGCCAGTACAGCAAGGGCAGCTTCCGCAATCTCAGATGCAGCCTATGCAGCAACCGCAA 2130
Query 402 TCTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATG 461
|||||||||||||||||||| ||||||||| ||||||||| || ||| ||||||||||||
Sbjct 2131 TCTCAGACAGTTCAAGATCAATCTCATGATAACCAAACAAATCAGCAAATGCAATCAATG 2190
Query 462 AGCATGCAGGGTGCTGGGTCAAGGGTACAACAGA 495
|||||||||||||||||| |||||| ||||||||
Sbjct 2191 AGCATGCAGGGTGCTGGGCCAAGGGCACAACAGA 2224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35149329474
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5