BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15790.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920485 jgi|Araly1|920485|scaffold_101766.1 667 0.0
> Ahg920485 jgi|Araly1|920485|scaffold_101766.1
Length=601
Score = 667 bits (361), Expect = 0.0
Identities = 522/596 (88%), Gaps = 26/596 (4%)
Strand=Plus/Plus
Query 40 AGAGAACCAACACCATGGACACAACAGGAGACTGGAGAACTCAATTTCCATCTGCTTCAC 99
|||||||| || ||||| || ||||| ||||||| ||||||||||||||||| |||||
Sbjct 13 AGAGAACC--CATCATGG--AC-ACAGGTGACTGGAAAACTCAATTTCCATCTGATTCAC 67
Query 100 GCTCGAGAATCGTCAATAAGATAATGGAAACACAGTTGAAGCAACTTCCATTTATTAGAC 159
|||||||| | |||||||| ||||||||||| | | | |||||||||||||||||| ||
Sbjct 68 GCTCGAGAGTTGTCAATAAAATAATGGAAACTCTGATAAAGCAACTTCCATTTATTGGAG 127
Query 160 CAGAGGGAACTAACGAGCTTAGGAAAATTGCAGTCAGATTTGAGGAGAAACTATTCAACA 219
||||||||| ||||||||| ||||||||||| |||||||||||||| ||| |||||| ||
Sbjct 128 CAGAGGGAATTAACGAGCTGAGGAAAATTGCTGTCAGATTTGAGGACAAAATATTCAGCA 187
Query 220 ATGCCTCT-AATCAGACTGAGTACCTTCGTCAAATATGTATGAAGATGCTGAATATGGAG 278
||| || | |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 188 ATG-CTATCAATCAGACTGAGTACCTTCGTCAAATATCCCTGAAGATGCTGAGTATGGAG 246
Query 279 ACTAAATCACAAAATGCAGCTGGTTCTTCCTC--C-G-C--T---G---ATGATAACACC 326
|||||||||||||||||||||||||||||||| | | | | | |||| |||| |
Sbjct 247 ACTAAATCACAAAATGCAGCTGGTTCTTCCTCATCTGTCTTTGCCGCTCATGACAACAGC 306
Query 327 CCACCGTTGGTTCCAGAGCCTTCTGTTCCGAACAATGAACCTGCCGTGAACACTGGTGAC 386
|||||||||||||||||||||||| |||||||||| ||||||| ||||| | |||||
Sbjct 307 CCACCGTTGGTTCCAGAGCCTTCTCTTCCGAACAAAGAACCTGATGTGAATTCAAGTGAC 366
Query 387 TGGAGAACTCAACAGCCACAGGATTCACGCCAGAAGAATATCAATGCTTTATTGGACACA 446
||||||||||||||||||| |||||||||||||||||||||| | || |||||||| |||
Sbjct 367 TGGAGAACTCAACAGCCACCGGATTCACGCCAGAAGAATATCTACGCGTTATTGGAAACA 426
Query 447 CTAAAGAAAATTGTTCCACATTCTGGGAAAGAAGGAATTGACGAGCTCATGAGAATTGCT 506
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTAAAGAAAAATGTTCCATACTCTGGGAAAGAAGGAATTGACGAGCTCATGAGAATTGCT 486
Query 507 GTCAGCTTAGAGGAGTTGATTTTCAACTCTGCTATAAACCAG-----G-AGGATTACCTT 560
|||||||| |||||||||||||||||| ||||||||| |||| | |||||||||||
Sbjct 487 GTCAGCTTCGAGGAGTTGATTTTCAACACTGCTATAAGCCAGTTTCAGGAGGATTACCTT 546
Query 561 GGCAAGATATCCTTAAAGATGCGGACTATGTAAGAGGGCAACTATAGTCAACAAGT 616
||||| |||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 547 GGCAAAATATCCTTAAAGATGCGGACTATGTAAGAGGGCAACTA-AGCCATCAAGT 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5