BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15810.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920487 jgi|Araly1|920487|scaffold_101768.1 1690 0.0
Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1 137 2e-31
> Ahg920487 jgi|Araly1|920487|scaffold_101768.1
Length=1345
Score = 1690 bits (915), Expect = 0.0
Identities = 1215/1351 (90%), Gaps = 55/1351 (4%)
Strand=Plus/Plus
Query 58 TCCTTAGGAGCAACCAAAATCATGGCGCTTCATCTCGCCAGACGCCACCAAAGGTTACCA 117
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCCTTAGGAGC-AGCAAAATCATGGCGCTTCATCTCGCCAGACGCCACCAACGGTTACCA 59
Query 118 TCAAACACATCTTTGATTCGATTTTTCTCCAATTCCTCATCGGACTCACCTCCCCAATTC 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TCAAACCCATCTTTGATTCGATTTTTCTCCAATTCCTCATCGGACTCACCTCCCCAAGTC 119
Query 178 ACGAACGCACCGGTTGAAAAACCGTCTCAGTCACCATCTTCTCCGTCACCGTC--A---- 231
|||| ||||||||||||| || ||||||||||||||||||||| | ||||| |
Sbjct 120 TTGAACACACCGGTTGAAAATCCCTCTCAGTCACCATCTTCTCCGCCTCCGTCGGACTCC 179
Query 232 --G-ACTCTTCTCCGATC-TTCGACATCAAGAACACTCTGAAACTGAAATTACAGAACCA 287
| ||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 180 TCGTACTCTTCTCCG-TCATTCGACATCAAGACCACTCTGAAACAGAAATTACAGAACCA 238
Query 288 GCAGGAGCAAGGAAGGAAACCATTTGAC-AGATCCGATGCACAATCTCAGAATCGCGGAT 346
|||||||||||||||||||||||| || ||||||||| | |||||||||| ||||||||
Sbjct 239 GCAGGAGCAAGGAAGGAAACCATTC-ACCAGATCCGATACCCAATCTCAGAGTCGCGGAT 297
Query 347 CGACTAGTTTCTCCCAAAAC---T----TG-G---------G----G---AAGAATCTCG 382
||||||||||| |||||||| | || | | | ||||| ||||
Sbjct 298 CGACTAGTTTCGCCCAAAACCAGTCACGTGTGTCTTCACATGATTTGGGGAAGAACCTCG 357
Query 383 CCAAGTTTCAGCGGAGATCCACCGTTCCACCTCCGAGGGATTCAGGCGGCGTACAGCCTC 442
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 358 CCAAGTTTCAGCGGAGATCCACCGTTCCACCTCCGAGGGATTCAGGTGGCGTACAGTCTC 417
Query 443 CGTCTTATATTTCCTTAGCGGGCCTCTATAAGCAGAGCGCTGCAACAAACTCATCGGATC 502
|| | | |||||||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 418 CGCCGCAGATTTCCTTAGAGGGCCTCTATAAGCAGAGCACTGCAACAAGCTCATCGGATC 477
Query 503 CTAGAAATTCGAAAGCTCAGGGTTTCAATTCAAACACTGTAAGTGAAACTTTAAAGAATT 562
||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 478 CTAGAAATTGGAAAGCTCAGGGTTTCAATTCGAGCACCGTAAGTGAAACTTTAAAGAATT 537
Query 563 TGAGGACGCAGATTAACACTTCAAACAACATGGGGAAGAGAGGAGGGGTTTTAGGAAGTT 622
|||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 538 TGAGGACGCAGACTAACACTTCAAACAACATTGGGAAGAAAGGAGGGTTTTTAGGAAGTT 597
Query 623 TCAAGAGCACTG-T--AGGTGAAGCATTGCCAAAATACCTGTTCGAAACACAAATGGATG 679
|||| |||||| | ||| ||||||||||| | || ||||||||||||| ||||||| |
Sbjct 598 TCAAAAGCACTACTGCAGGAGAAGCATTGCCCATATCCCTGTTCGAAACAAAAATGGACG 657
Query 680 AGAGTAAGGGAAGTGAAGGTGAAACAGAGGAGGCGATGACGGAGTTCTTAATGTTTTATA 739
|||| ||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 658 AGAGGGAGGGAAGGGAAGGTGAAACGGAGGAGATGATGACGGAGTTCTTAACGTTTTATA 717
Query 740 ACGAAGAAGAATTAGGTGAGAAACTAAGGACGCTTAGGCCAGAAGGAGAGAAAAAAGAAG 799
||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||
Sbjct 718 ACGAAGAAGAATTAGGTGACAAACTAAGGATGCTTAGGCCTGAAGGAGAGAAAGAAGAAG 777
Query 800 GATGGTTCTCATTGGAGGAGTTGAATCAGAGATTGGTTAAGCTAAGGCAAGTTGAAGAGA 859
|||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 778 GATGGTTCTCATTGCAGGAGTTGAATCAGAGGTTGGTCAAGCTAAGGCAAGTGGAAGAGA 837
Query 860 AAGAGGCACAATATCGGACTAAGAACTTTGCC-CAACTCAGAAATGTTATTTCATCATTT 918
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||
Sbjct 838 AAGAGGCACAATATCGGACTAAGAATTTTGCGACA-CTCAGAAATGTTATTTCATCAATT 896
Query 919 AAGAATGAGAATT-C--------TGAAGCTAGTTCCCAGCAGAATGTCGCCATTATGGGC 969
|||||||| ||| | ||||| | ||||||||||||| || |||||||||||
Sbjct 897 AAGAATGACAATGACAAAAAAAATGAAGTTTTTTCCCAGCAGAATATCACCATTATGGGC 956
Query 970 CATCTCGGTGGTATCCCTGAATACAAGCTTCTTCCTCCAAAAGAGGATCTAGTTGACACT 1029
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 957 CATTTGGGTGGTATCCCTGAATACAAGCTTCTTCCTCCTAAAGAGGATCTAGTTGACACT 1016
Query 1030 TATTTCCACCCAGATAACATGTCCTCTGCGGAGAAGATGAAAATTGAGCTCTCGAAAGTC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 TATTTCCACCCAGATAACATGTCCTCTGCGGAGAAGATGAAAATTGAGCTCACGAAAGTC 1076
Query 1090 AGGGAAGAGTTCAAGATGTCAGAATCAGACTGTGGTTCTGCACGTGTGCAAGTGGCACAA 1149
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1077 AGGGAAGAATTCAAAATGTCAGAATCAGATTGTGGTTCTGCACGTGTGCAAGTGGCACAA 1136
Query 1150 CTCACTACTAAGATCAAGCATTTATCCTCAAGTTTGCACAAAAAGGACAAGCATTCGCGG 1209
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1137 CTCACTACTAAGATCAAGCATTTATCCTCAAGTTTACACAAAAAGGACAAGCATTCACGG 1196
Query 1210 AAGGGACTTTTAGGAATGGTGCAGAAACGGAAGAAACTGTTGAAATATCTAAGACGAACT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGGGACTTTTAGGAATGGTGCAGAAACGGAAGAAACTGTTGAAATATCTAAGACGAACT 1256
Query 1270 GACTGGGATTCTTACTGCCTTGTCCTGTCAAAACTCAGCCTTCGTGACAACCCGGATTAC 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1257 GACTGGGATTCTTACTGCCTTGTCCTGTCAAAACTCAGCCTTCGTGACAACCCGGAATAC 1316
Query 1330 AAG-TGCTAAGCTTTATTGCACTAGAGACCC 1359
||| | ||||||||||| || |||||||||
Sbjct 1317 AAGCT-CTAAGCTTTAT-GCGTTAGAGACCC 1345
> Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1
Length=1171
Score = 137 bits (74), Expect = 2e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1537 AATGAAGTTGTGGATCTCTTTCATTGATGTTTAGTATTCCCTTTCACATTTGAGTTGTGA 1596
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1171 AATGAAGTTGTGGATCTCTTTCATTGATGTTTAGTATTCCCTTTCATGTTTGAGTTGCGA 1112
Query 1597 TAATAAAGTTATCTACGAACAAGCCTCAT 1625
|||||||||||| || |||||||||||||
Sbjct 1111 TAATAAAGTTATTTATGAACAAGCCTCAT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5