BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15820.1
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1 1840 0.0
> Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1
Length=1171
Score = 1840 bits (996), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 14/1180 (1%)
Strand=Plus/Plus
Query 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTCTCATTATCTCACATTG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTTTCATTATCTCACATTG 60
Query 61 TCCCTCTAAATCTCCTCTCTTTGATTCTTTCTGCTCCGAAAAACAGAGAGAGAGAACAAC 120
||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 61 TCCCTCTAAATCTCCTCCCTTTGATTCTTTCTGCTCCG-AAAAC----AGAGAG---AAC 112
Query 121 AACCAAACACTCATTTCTCCACATCTTGAGAG-aaaaaaaCAGAGCAAGTATATTAGAGA 179
||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 113 AACCAAACACTCACTTCTCCACATCTTGAGAGAAAAAAAACAGAGGAGGTATATTAGAGA 172
Query 180 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 232
Query 240 CGGAGGCAAGA-GAGGTGCCACCGCATTGGCAAGCGGCGTAGGCACTGGAGCTCAGAGAG 298
||||||||||| || ||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 233 CGGAGGCAAGAGGA-GTGCCACCGCATTGGGAAACGGCGTTGGCACTGGAGCTCAGAGAG 291
Query 299 TTGGCAGGAAAACTCTTATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 358
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTGGCCGGAAAACTCTGATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 351
Query 359 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 352 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCGG 411
Query 419 GAGATTTCGGGTTCGACCCATTGGGTTTGGGGAAAGACCCGGCTTTTCTGAAATGGTACA 478
| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 412 GTGATTACGGGTTCGACCCACTGGGTTTGGGAAAAGACCCGGCTTTTCTGAAATGGTACA 471
Query 479 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTCGTCG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 472 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTTGTTG 531
Query 539 GCCAGGCCTGGAGCGGTGTGGCATGGTTTGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 598
||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 532 GCCAGGCTTGGAGCGGTGTGCCTTGGTTCGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 591
Query 599 CCTTCTCGTTCGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CCTTCTCGTTTGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 651
Query 659 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCAACGCCATGGT 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 652 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCGACGCCGTGGT 711
Query 719 CGAAGACCGCCGAGAATTTCGCGAACTATACCGGCGATCAGGGATACCCCGGTGGGAGAT 778
||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 712 CGAGGACCGCCGAGAATTTCGCCAACTATACCGGCGATCAGGGATATCCCGGTGGGAGAT 771
Query 779 TCTTCGATCCGTTGGGTCTCGCCGGGAAAAACCGCGACGGTGTTTATGAGCCGGACTTTG 838
|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
Sbjct 772 TCTTTGATCCGTTGGGTCTCGCCGGCAAAAATCGCGACGGTGTTTATGAGCCGGACGTAG 831
Query 839 AGAAGCTGGAGAGGCTGAAATTGGCAGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 898
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 832 AGAAGCTGGAGAGGCTGAAATTGGCGGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 891
Query 899 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 951
Query 959 GAGAAAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTCCAAAAACCTAATG 1018
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 952 GAGATAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTTCAAAAACCTAATG 1011
Query 1019 TTTCTCTTCTTCAATGTGACATTTGGGAAAAGATCATCAAACCATTGCT-ATAAATGTAA 1077
|||||| |||||||||||||||||||||||||||||||| | ||||||| | ||||||||
Sbjct 1012 TTTCTCCTCTTCAATGTGACATTTGGGAAAAGATCATCATATCATTGCTTAAAAATGTAA 1071
Query 1078 AATGAAATCAT--GAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAG 1135
|||||| |||| ||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 1072 AATGAATTCATATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAG 1131
Query 1136 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1175
||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44146337886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5