BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15825.1

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471782 jgi|Araly1|471782|fgenesh2_kg.1__1736__AT1G15825.1         544    2e-154


> Ahg471782 jgi|Araly1|471782|fgenesh2_kg.1__1736__AT1G15825.1
Length=378

 Score =  544 bits (294),  Expect = 2e-154
 Identities = 351/379 (93%), Gaps = 2/379 (1%)
 Strand=Plus/Minus

Query  4    CCTCCACCGGTTCAAGATTTCCCGCC-AATTCTCACTCCACCGGCTGAAGAGTTCCCGCC  62
            |||||||||||||||||  |||| || | || || ||||||||| | |||| ||||||||
Sbjct  378  CCTCCACCGGTTCAAGAAGTCCCACCGATTTTTC-CTCCACCGGTTCAAGAATTCCCGCC  320

Query  63   GATTTTGCCTCCACCGGTTCAAGAGATCCCGCCGGTTTTCACATTACCACCGACCGTACA  122
             ||| | || ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct  319  AATTCTACCGCCACCGGTTGAAGAGATCCCGCCGGTTTTCACATTACCACCAACCGTACA  260

Query  123  AGATCCACCGACAATTCCAGTATTCTCCACACCACCAGTCCTCGGAGATTTCCCACCCCA  182
            ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  259  AGATCCACCGACAGTTCCAGTATTCTCGACACCACCAGCCCTCGGAGATTTCCCACCCCA  200

Query  183  AACTCCCGACTTTACCACGCCGCCAGAGGTCACAAATCCATGGCAACCGCCGGTGACGTC  242
            |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  199  AACTCCCGTCTTTACCACGCCGCCAGAGGTCACGAATCCATGGCAACCGCCGGTGACGTC  140

Query  243  ATTCGCACCACCAATAGAGTCCATCCCAACAATACCGGATAATCCGTTTCCGGTTACACC  302
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  139  ATTCGCACCACCAATAGAGTCCATCCCAACAATACCGGATAATCCATTTCCGGTTACACC  80

Query  303  AAACCCGGACATGGGTTCAAATCAACCGTTTGTTGAGCTTCCTCCGCCTACTTGGGATTC  362
            |||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||
Sbjct  79   AAACCCGGACATGGGTTCAAATCAACCGCTGGTTCAGCTTCCTCCGCCCACTTGGGATTC  20

Query  363  CCCGCCATTTAATCGTTAA  381
             || |||||||||||||||
Sbjct  19   ACCACCATTTAATCGTTAA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13621545273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5