BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15830.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920489 jgi|Araly1|920489|scaffold_101770.1 917 0.0
> Ahg920489 jgi|Araly1|920489|scaffold_101770.1
Length=1396
Score = 917 bits (496), Expect = 0.0
Identities = 754/874 (86%), Gaps = 35/874 (4%)
Strand=Plus/Plus
Query 404 TTCCTGGAGCTCCGCCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTC 463
|||| ||||||||||| || |||||| |||||||| ||||| ||||||||||||||||
Sbjct 364 TTCCCGGAGCTCCGCCACCTAAAAGA---GGAGGAGGAGAACCGGTGATTCCCGGAGCTC 420
Query 464 CGCCGCCAAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAA 523
|||| || || |||||||||||||||||||| || ||||||||||| || ||||||| ||
Sbjct 421 CGCCACCCAATAGAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCCACCGCCTAGAA 480
Query 524 GAGGAGGAGGGGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGG 583
|||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 481 GAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCTCCTAAAAGAGGAGGAGGAG 540
Query 584 GTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGA 643
||||||| || | ||||||||| || || ||||||||||||||||||| ||| || ||||
Sbjct 541 GTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGGAGGAGATGAGCCGGTGA 600
Query 644 TTCCCGGAGCT-CCACCGCCTAAAAGAGGAGGAGGAGGGGAA-CCAGTGATTCCCGGAGC 701
||||||||| | ||||||||||| |||||||||||||||||| | | | | ||| |||||
Sbjct 601 TTCCCGGAG-TGCCACCGCCTAATAGAGGAGGAGGAGGGGAATCGA-TTAGTCCTGGAGC 658
Query 702 GCCACTGCCTAAAAGAGGCGGAGGAGGTGAATCTGTGGTTCCCGGAGCGCCACCACCTAA 761
|| | | ||||||||| |||||||||||||| |||||||| |||| ||| || |||||
Sbjct 659 CCCGCCACTTAAAAGAGGGGGAGGAGGTGAATCGGTGGTTCCGGGAGAGCCTCCGCCTAA 718
Query 762 AAGAGGAGGCGGTGTCATTGTAAATGGTGGCTGTGAAACCGTGCCGCCAGGTAGAGGTGG 821
|||||||||||||||||||||||| |||||||||||||||| ||| |||||||| || ||
Sbjct 719 AAGAGGAGGCGGTGTCATTGTAAACGGTGGCTGTGAAACCGAGCCACCAGGTAGTGGCGG 778
Query 822 TGGTGGTGATAAAACTAATGGAAGAGGTGGTGAGGGAAGAGAGGAAGATAATGGTGGTGG 881
|||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 779 TGGTGGCGATAAAACTAAAGGAAGGGGTGGTGAGGGAAGGGAGGAAGATAATGGTGGCGG 838
Query 882 AAGAGGCGCAGAAGGTGGAGGAAGGGGTA-G-C----ACCGGAGAAGGCGTCAC--A--- 930
||| ||||||||||| ||||||||||||| | | || |||||||||||||| |
Sbjct 839 AAGCGGCGCAGAAGGGGGAGGAAGGGGTAGGACTGGAACAGGAGAAGGCGTCACGGATGG 898
Query 931 -GATGGTGGTGGTAGAACAGGAAATAAAGGCGGCAATGGAGGGAGTATAAAAATCGGCGT 989
||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||
Sbjct 899 TGATGGTGGTGGTAGAACGGGAAGTAAAGGTGGCCATGGAGGGAGTATAAAAATCGGCGT 958
Query 990 AGGGACAAATGGTATCACCGGCGGTACTGGCGGCGGTGAAGCTGGTGCTGGGATGCAAGT 1049
|||||||||||| | || || | | ||||| ||||||||||||||||| ||||||
Sbjct 959 AGGGACAAATGGCGTAAC-GG-G--A--GGCGG---TGAAGCTGGTGCTGGGACGCAAGT 1009
Query 1050 TATGCAAGGCTGGGGAGGAGGCGGTTCCGGGGCTGCT-ACACAAGTAATGCAAGGCTGCG 1108
|||||||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||||
Sbjct 1010 TATGCAAGGCTGCGGAGGAGGTGGTGCCGGGGCTG-TGACACAAGTAATGCAAGGCTGCG 1068
Query 1109 GAGGAGGTG-ATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGGAGGCGGTGCT 1167
||||||| | | || || ||| |||||||||||||||||||| |||||||| |||||
Sbjct 1069 GAGGAGGCGGA-GCCGGAGCTGGAACACAAGTAATGCAAGGCTGCGGAGGAGGTGGTGCC 1127
Query 1168 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGcggtggtggtggagatggtgga 1227
|||||||||||||||||||||||||| |||||||| || ||||||||| ||||| |||
Sbjct 1128 GGGGCTGTGACACAAGTAATGCAAGGTTGCGGAGG---CGATGGTGGTGGCGATGGGGGA 1184
Query 1228 ggtgggcaaggaaccggaatcggaggaggcggtg 1261
|||| |||||||| ||||| || || |||||||
Sbjct 1185 GGTGAGCAAGGAATGGGAATTGGCGGTGGCGGTG 1218
Score = 634 bits (343), Expect = 0.0
Identities = 531/620 (86%), Gaps = 20/620 (3%)
Strand=Plus/Plus
Query 62 GCGGTTGTCCGATGACTATATCCGGTGGGAGATTGTTTACTGGTGGAGGAGATCCCGTGA 121
|||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| |||
Sbjct 121 GCGGTTGTCCGATGCCTATATCGGGTGGGAGATTGTCTACCGGTGGAGGAGATCCGGTGG 180
Query 122 TTATAACCGGTGGGAGATTGTCTACA-GGTGCAGCTGGTGGCGTTAATGTTGACCGGTCT 180
|||||||| || | ||| | | |||||||||| |||||||| || |||||||||
Sbjct 181 TTATAACC----GGCG-TTG--GAAATTGTGCAGCTGGCGGCGTTAAAGTAGACCGGTCT 233
Query 181 AAAGGCGGAGGAAGGAGGAAAACTGGAGATGGTGGTGGTGATCCAGTA-GTAATATCAGG 239
||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 234 AAAGGCGGAGGAATGAGGAAAACTGGAGATGGCGGTGGTGATCCAGTAGGT-ATATCAGG 292
Query 240 CGGCGAAAACCATGCTAGTGGTGGCATGGGCGGGACGTCTGCGACTAGAGGCGGAGGAGG 299
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 293 CGGCGAAAACCATGCTATTGGTGGCATGGGCGGGACGTCTGCGACTAGCGGCGGAGGAGA 352
Query 300 TGAACCGGT-GATTCCCGGAGCTCCGCCACCTAATAGAGGAGGAGGAGAAACGGTGATTC 358
|| | | | |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 353 TGTGCTAGCAG-TTCCCGGAGCTCCGCCACCTAAAAGAGGAGGAGGAGAACCGGTGATTC 411
Query 359 CCGGAGCACCACCGCCTA-TAAGAGGAGGAGGGGGTGAACCAGCGATTCCTGGAGCTCCG 417
||||||| || || || | || |||||||||| |||||||| | ||||| ||||| ||
Sbjct 412 CCGGAGCTCCGCCACCCAATA-GAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCCA 470
Query 418 CCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCAAAAAGA 477
||||| | |||||| |||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 471 CCGCCTAGAAGAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCTCCTAAAAGA 530
Query 478 GGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGGT 537
||||||||||||||||| || | ||||||||| || || ||||||||||||||||| | |
Sbjct 531 GGAGGAGGAGGTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGGAGGAGAT 590
Query 538 GAACCAGTGATTCCCGGAGCT-CCGCCGCCTAAAAGAGGAGGAGG-GGGTGAACC-AGTG 594
|| || ||||||||||||| | || |||||||| ||||||||||| ||| ||| | | |
Sbjct 591 GAGCCGGTGATTCCCGGAG-TGCCACCGCCTAATAGAGGAGGAGGAGGG-GAATCGATT- 647
Query 595 ATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCT 654
| ||| ||||| ||||| | ||||||||| |||||||||||| | ||| |||| ||||
Sbjct 648 AGTCCTGGAGCCCCGCCACTTAAAAGAGGGGGAGGAGGTGAATCGGTGGTTCCGGGAGAG 707
Query 655 CCACCGCCTAAAAGAGGAGG 674
|| |||||||||||||||||
Sbjct 708 CCTCCGCCTAAAAGAGGAGG 727
Score = 344 bits (186), Expect = 1e-93
Identities = 291/341 (85%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 292 GGAGGAGGTGAACCGGTGATTCCCGGAGCTCCGCCACCTAATAGAGGAGGAGGAGA--AA 349
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 390 GGAGGAGGAGAACCGGTGATTCCCGGAGCTCCGCCACCCAATAGAGGAGGAGGAGGTGAA 449
Query 350 C-GGTGATTCCCGGAGCACCACCGCCTATAAGAGGAGGAGGGGGTGAACCAGCGATTCCT 408
| ||| ||||||||||| |||||||||| |||||||||||| |||||||| | ||||||
Sbjct 450 CCGGTTATTCCCGGAGCGCCACCGCCTAGAAGAGGAGGAGGAGGTGAACCTGTGATTCCC 509
Query 409 GGAGCTCCGCCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCG 468
||||||||||| || |||||||| |||||||||||||| || | ||||||||| || ||
Sbjct 510 GGAGCTCCGCCTCCTAAAAGAGGAGGAGGAGGTGAACCGGTAAATCCCGGAGCGCCACCA 569
Query 469 CCAAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCT-CCGCCGCCTAAAAGAGG 527
|| |||||||||||||||| ||| || ||||||||||||| | || |||||||| |||||
Sbjct 570 CCTAAAAGAGGAGGAGGAGATGAGCCGGTGATTCCCGGAG-TGCCACCGCCTAATAGAGG 628
Query 528 AGGAGG-GGGTGAACC-AGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGGT 585
|||||| ||| ||| | | | | ||| ||||| ||||| | ||||||||| ||||| |||
Sbjct 629 AGGAGGAGGG-GAATCGATT-AGTCCTGGAGCCCCGCCACTTAAAAGAGGGGGAGGAGGT 686
Query 586 GAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGG 626
||| | ||| |||| |||| || |||||||||||||||||
Sbjct 687 GAATCGGTGGTTCCGGGAGAGCCTCCGCCTAAAAGAGGAGG 727
Score = 335 bits (181), Expect = 6e-91
Identities = 313/375 (83%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 1090 CAAGTAATGCAAGGCTGCGGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGC 1149
||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||
Sbjct 1005 CAAGTTATGCAAGGCTGCGGAGGAGGTGGTGCCGGGGCTGTGACACAAGTAATGCAAGGC 1064
Query 1150 TGGGGAGGAGGCGGTGCTGGGGCTGTG-ACACAAGTAATGCAAGGCTGCGGAGGAGGcgg 1208
|| ||||||||||| || || |||| | ||||||||||||||||||||||||||||| ||
Sbjct 1065 TGCGGAGGAGGCGGAGCCGGAGCTG-GAACACAAGTAATGCAAGGCTGCGGAGGAGGTGG 1123
Query 1209 tggtggtgga-gatggtggaggtgg-gcaaggaaccggaatcg--ga-ggaggcggtggt 1263
|| || || | || | || |||||| |||| || | || |||| |||
Sbjct 1124 TGCCGG-GGCTG-TGACACAAGTAATGCAAGGTTGCGGAGGCGATGGTGGTGGCGATGGG 1181
Query 1264 gg---tgAGCAAGGAACCGGAGTTGGCGGTGGAGGTGATACTTGTACACAAGTAACACAC 1320
|| ||||||||||| ||| |||||||||| |||||| ||| ||||||||||| ||||
Sbjct 1182 GGAGGTGAGCAAGGAATGGGAATTGGCGGTGGCGGTGATGCTTCTACACAAGTAATACAC 1241
Query 1321 GGTGGTGGTGGTGCACCGTTGACTATGATCGGAGGCGGAGGTGGTGAGCAAGGTGTGACT 1380
||||||||||||| ||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 1242 GGTGGTGGTGGTGAACCGTTGACTACGATTGGAGGCGGTGGTGGTGAGCAGGGTGTGACA 1301
Query 1381 ---GGGAGTGACGGTGGGGGCGGAAGGGGAAGAGGTGGTGGTAAGGTCGCCGGAGGTGGC 1437
|||| ||||||||| ||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1302 ACAGGGAATGACGGTGGCGGCGGAAGGGGAAGAGGTGGTGGTAAGATCCCCGGAGGAGGC 1361
Query 1438 AAGAAAGGGTTTTGA 1452
|||||||||||||||
Sbjct 1362 AAGAAAGGGTTTTGA 1376
Score = 270 bits (146), Expect = 2e-71
Identities = 199/224 (89%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 548 TTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGGTGAACCAGTGATTCCCGGAGCTC 607
|||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||
Sbjct 364 TTCCCGGAGCTCCGCCACCTAAAAGAGGAGGA---GGAGAACCGGTGATTCCCGGAGCTC 420
Query 608 CGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCACCGCCTAAAA 667
|||| || || |||||||||||||||||||| || ||||||||||| |||||||||| ||
Sbjct 421 CGCCACCCAATAGAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCCACCGCCTAGAA 480
Query 668 GAGGAGGAGGAGGGGAACCAGTGATTCCCGGAGCGCC-ACTGCCTAAAAGAGGCGGAGGA 726
||||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||
Sbjct 481 GAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCT-CCTAAAAGAGGAGGAGGA 539
Query 727 GGTGAATCTGTGGTTCCCGGAGCGCCACCACCTAAAAGAGGAGG 770
|||||| | || ||||||||||||||||||||||||||||||
Sbjct 540 GGTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGG 583
Score = 137 bits (74), Expect = 2e-31
Identities = 100/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1045 CAAGTTATGCAAGGCTGGGGAGGAGGCGGTTCCGGGGCTGCTACACAAGTAATGCAAGGC 1104
||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1050 CAAGTAATGCAAGGCTGCGGAGGAGGCGGAGCCGGAGCTGGAACACAAGTAATGCAAGGC 1109
Query 1105 TGCGGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGG 1157
||||||||||||| ||| |||||| | ||||||||||||||||| || |||||
Sbjct 1110 TGCGGAGGAGGTGGTGCCGGGGCTGTGACACAAGTAATGCAAGGTTGCGGAGG 1162
Score = 126 bits (68), Expect = 4e-28
Identities = 90/101 (89%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1108 GGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGGAGGCGGTGCT 1167
||||| ||||| ||||| ||| || ||||| ||||||||||| |||||||| |||||
Sbjct 978 GGAGGCGGTGAAGCTGGTGCTGGGACGCAAGTTATGCAAGGCTGCGGAGGAGGTGGTGCC 1037
Query 1168 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGcgg 1208
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGCGG 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5