BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15840.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471783 jgi|Araly1|471783|fgenesh2_kg.1__1737__AT1G15840.1 994 0.0
> Ahg471783 jgi|Araly1|471783|fgenesh2_kg.1__1737__AT1G15840.1
Length=870
Score = 994 bits (538), Expect = 0.0
Identities = 731/819 (89%), Gaps = 33/819 (4%)
Strand=Plus/Plus
Query 106 AATCAGAAAATGATTAGCGTTTGAGCAGAGGGGATTCCATGAACAGTGGAGGAATCTGAT 165
||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 80 AATCAGAAAATGATTAGTGTTTGAGCGGAGGGGATTCCATTAACAGTGGAGGAAACTGAT 139
Query 166 CAAAGGCCTCTGCGGACGAGGTTTGGGCGGGAACATCCGGAGGAGGCAACCATGTTATTG 225
|||||| |||| | ||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 140 CAAAGGTCTCTACCGACGA------GGCGGGAACATCCGGAGGAGGCAGCCAAGTTATTG 193
Query 226 GTGGCATAGGTGGAAACTCATCCAACGGCGGTGGAAGAGAGAACACT-GGCGGCGTTTCG 284
||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||
Sbjct 194 GTGGCATAGGTGGAAACTCATCCTCCGGTGGTGGAAGAGAGAACA-TCGGCGGCGTTTCT 252
Query 285 TCTCCAAATGGTGGCGGAGGTAGCCATAACGGCGGAGGTTGTGTCTGGCGGCGGAGGAGA 344
||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 253 TCTTGAAATGGTGGAGGTGGTAACCATAACGGCGGAGGTTGTGTCTGGCGGCGGAGGAGA 312
Query 345 CGGCACCAAAGGGGGCGGAAACACTATCACCGGCGGGGGCGGTGAAGGGAAGAAGAAAAA 404
||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 313 CGGCACCAAAGGGGGAGGAAACACTATGACTGGCGGTGGCGGTGAAGGGAAGAAGAAAAA 372
Query 405 tggtggcggagagggaggaggaggtgaaggaacgagcggtgaaggaggaggtggtggtgg 464
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 373 TGGTGGCGGAGAGGGAGGAGGAGGTGAAGGAACAAGCGGTGAAGGAGGAGGCGGTGGTGG 432
Query 465 tgatggaaCCAAAGGCGGTGGAGACGGCATAAGCGGTGGT-G-GGCATGGGGACGGCCTT 522
||||||||||||||| ||||||||||||| |||| | ||| | || |||||||||||||
Sbjct 433 TGATGGAACCAAAGGTGGTGGAGACGGCACAAGCCGCGGTCGAGG--TGGGGACGGCCTT 490
Query 523 GGATGCAGTGGTGGTGG-GGGTGATGGAACCAAAGGTGGCGGTAGACGTGGGGATGGCCT 581
||| ||||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||
Sbjct 491 GGACGCAGTGGTGGTGGTGGG-GATGGAACCAAGGGTGGTGGTAGACGTGGGGACGGCCT 549
Query 582 TGGACGCGGTCTCGGACGTGGTGGTGGACGCGGTGGTTGGAATGGTAGAAAAGGGTTTTC 641
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 550 TGGACGCGGTCTCGGACGTGGTGGTGGACGCGGAGGTTGGAAAGGGAGAAAAGGGTTTTC 609
Query 642 CGGCGAAGGAGTTGTAGGAAAAGGCCAATGACCACAGGTGTCGAACAAGTATTGATACAG 701
||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 610 CGGTGAAGGTGTTGTAGGAAAAGGCCAATGGCCACAGGTTTCGAATAAGTATTGATAGAG 669
Query 702 AGGATCGCAGCTTCTGCGTCCGCGATTAC-GACTGCTACCACTGCTGCGTCTTCCTCTGT 760
||||||||||||||| ||||| ||||| | ||| ||||||||| | ||||| |||||||
Sbjct 670 AGGATCGCAGCTTCTCCGTCCACGATT-CTGACCGCTACCACT--T-CGTCTCCCTCTGT 725
Query 761 TTGATTGCTTTTGCTCCTCTACGGTTAAAGCTTCTACGTTAACGTTTGACTTCACTTCAT 820
|||||||||||||||||| |||||||| |||||||||||||||||||| | | | |
Sbjct 726 TTGATTGCTTTTGCTCCTTTACGGTTACAGCTTCTACGTTAACGTTTG--T-C--TG-A- 778
Query 821 AGTCTGATATGGACTCTGTTGTGTGAATGATTAAAAGGAGTAGAGACAACAAAAGTCCAA 880
| || |||||||||| ||| || || ||||||||||||||||||||||| |||||
Sbjct 779 -G----AT--GGACTCTGTTCTGTTAACGACTAAAAGGAGTAGAGACAACAAAAATCCAA 831
Query 881 CCACGAGTAGTTGTTTTGCTTTCATCATCTCTTTGTGTT 919
| |||||||||||||||||||| ||||||||||||||||
Sbjct 832 CTACGAGTAGTTGTTTTGCTTTGATCATCTCTTTGTGTT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5