BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15870.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920494 jgi|Araly1|920494|scaffold_101775.1 1134 0.0
> Ahg920494 jgi|Araly1|920494|scaffold_101775.1
Length=770
Score = 1134 bits (614), Expect = 0.0
Identities = 721/773 (93%), Gaps = 6/773 (1%)
Strand=Plus/Plus
Query 49 GTGTTCTTCGTCTCTCTGTCAATGGCTCGCCTCCTCAGATGTCTGAGAAGAAGTTTCATA 108
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 GTGTTATTCGTCCCTCTGTCAATGGCTCGCCTCCTCAGATGTCTGAGAAGAAGTGTGATA 60
Query 109 TTTAGTTCATCGA-CTTCGATTGCGTACAGAAACCCTAGAATATGTGTTCAGTCAAATCA 167
|| |||||||| | |||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 61 TTAAGTTCATC-ACCTTCGATTTCGTACCGAAACCCTAGAATATGTGTCCAGTCAAATCA 119
Query 168 AAGCTATATTTTCTTAAGCAGCCGCAAGTTTCTCAGCTCGGGGAGTTACGTTTCAGAAAT 227
|| | || |||||||| ||||| ||||||||||| |||||||||||| | ||||||||
Sbjct 120 AAACCCTAGTTTCTTAATTAGCCGTAAGTTTCTCAGTTCGGGGAGTTACATATCAGAAAT 179
Query 228 GCGGAGAA-CAGCTTTCGAGGGTAACATTCTCAGATTAATTCGTT-TGGAGATTCAGTCC 285
|| || || |||||||| | |||||||||||| |||||||||||| | ||||||||||||
Sbjct 180 GC-GAAAATCAGCTTTCCAAGGTAACATTCTCCGATTAATTCGTTCT-GAGATTCAGTCC 237
Query 286 GAGCTTGATCACTCGCCTATTCTTCAGCCTGAAGAGAGTTTTGGTCCATTCACGGTGGAT 345
||||| |||||||||||||||||| ||| ||| || || ||||||||||| || ||||||
Sbjct 238 GAGCTCGATCACTCGCCTATTCTTAAGCTTGAGGACAGGTTTGGTCCATTTACCGTGGAT 297
Query 346 GAGCGTCCGGGGGAGCAGTGGATTAGCTTGAGAAGAAAATTTGGGGAGAAGGAAGATATT 405
||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 298 GAGCGGCCAGGAGAGCAGTGGATTAGCTTGAGAAGAAATTTTGGGGACAAGGAAGATATT 357
Query 406 AAGATTGAAGCAACCATGTTTGATGGATCAGTTCCATCATCAAAATCTACTACCAGCGAC 465
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 AAGATTGAAGCAACCATGTTTGATGGATCAGTTCCATCATCAAAATCTACTAGCAGCGAC 417
Query 466 CCTGAAGATGTTCAGCTTCATATTACTTTCATTGTCAACATCTCTAAGGGTGATGGTGAG 525
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCTCAAGATGTTCAGCTTCATATTACTTTCATTGTCAACATCTCTAAGGGTGATGGTGAG 477
Query 526 ACCTTAGAGATCATGTGTTCTGCTTGGCCTGATACCATACAGATCACCAAGTTCTTTGTT 585
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 478 ACCTTAGAGATCATGTGTTCTGCTTGGCCTGATACTATACAGATCTCCAAGTTCTTTGTT 537
Query 586 CGTAAAAGCAGCCAGAACTCACCAAATGCCTATATTGGACCTGAATTCCAGGAAATGGAA 645
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 CGTAAAAGCAGCAAGAACTCACCAAATGCCTATATTGGACCAGAATTCCAGGAAATGGAA 597
Query 646 GATGAACTTCAAGACTCGGTTTATCGATTTTTGGAGGAAAGAGGTATAAGTGATGATCTT 705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 598 GATGAACTTCAAGACTCGGTTTATAGATTTTTGGAGGAAAGAGGTATAAGTGATGGTCTT 657
Query 706 GCTGAGTTCTTGCATCAGTACATGAAGAACAAAGATAAAGCTGAGTATATTAGATGGATG 765
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GCTGAGTTCTTGCATCAGTACATGAAGAACAAAGATAAAGCTGAGTACATTAGATGGATG 717
Query 766 GAGACTGTTAAATCTTATGTTGAGCAAAAATAAAATCTTCTGCCGACCACATT 818
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 GAGACTGTTAAATCTTATGTTGAGCAAAAATAAAATCTTCTGCTTACCACATT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5