BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15880.1
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471787 jgi|Araly1|471787|fgenesh2_kg.1__1741__AT1G15880.1 1670 0.0
> Ahg471787 jgi|Araly1|471787|fgenesh2_kg.1__1741__AT1G15880.1
Length=1069
Score = 1670 bits (904), Expect = 0.0
Identities = 1025/1081 (95%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 1 GTACGCAGAAATTCTGTCTGCGTCTCCGAACCAACTCTATCCTTCTCTCAATCCGATCCG 60
|||||||||||||||| |||||||||||||||||||| | | || | ||||||||||
Sbjct 1 GTACGCAGAAATTCTGCCTGCGTCTCCGAACCAACTC--T-C-GATC-CGATCCGATCCG 55
Query 61 TTCCGTTCACTACTTGTCTCAATTTCGAACCAATTGGATCGCATCTTTTAGGGGCTCAAA 120
|| || | ||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 56 TT---TT-A-TACTTCTCTCAATTTCGAACCAATTGGATCGCATCTTTCGGGGGCTCCAA 110
Query 121 CCTTTGGTGACGAGGACGAGGAAGAAGATTGTCGCATCTGATTTATATCGGA-AAAAGGT 179
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 111 CCTTTGGTGACGAAGACGAGGAGGAAGATTGTCGCATCTGATTTATATCGGAGAAAAGGT 170
Query 180 CTCTTGCCGGAAAGGACACGATCCGCTTTCATAAAGGAGAGATTTTGACAGATTCAGTAG 239
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 171 CTCTTGCCGGAAAAGACACGATCCGCTTTCATAAAGGAGAGATTTTTACAGATTCAGTGG 230
Query 240 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 290
Query 300 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCCACAAAGGCTTTATCAA 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 291 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCAACAAAGGCTTTATCAA 350
Query 360 AATCAGATGGTA-ATGAGAGTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTG 418
| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGTCAGATGGTTCA-GAGACTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTC 409
Query 419 CAACAAGTTAATGCTCAGATGCAAGCATGGGTATCTTCTGGTGGGTCAGAAATGGTCTCC 478
|||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 410 CAACAAGTTAATGCCCAGATGCAAGCATGGGTTTCTTCAGGTGGATCAGAAATGGTCTCC 469
Query 479 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 529
Query 539 CGCTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CGGTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 589
Query 599 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAAGCCCTGATCAAGGAA 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 590 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAATCCCTGATCAAGGAA 649
Query 659 CATATGGGAATCAACCGCAATACAGCTCAGATGGACGGTGTCATTTCACAAGCTCAGGCA 718
||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 650 CATATGGGAATCAACCGCAATACGGCACAAATGGATGGTGTCATTTCACAAGCTCAGGCA 709
Query 719 ACACTCGGTACGCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 778
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ACACTCGGTACTCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 769
Query 779 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAGAGGAAAAAG 838
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAAAGGAAAAAG 829
Query 839 TCGATGGATACAATCATTCTTTCACTCGTTGCGGCTGTATGCACATTTCTCATATTCATT 898
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 830 TCGATGGATACAATCATTCTTTCACTTGTTGCGGCTGTATGCACATTTCTCATATTCATT 889
Query 899 TACTGGATAACCAAGTAGAATTTGCCCATTTCTTTCGTTTCATCTTTATGTTGGGCCACG 958
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 890 TACTGGATAACCAAGTAGAATTTGCCCATT-CTTTCGTCTCATCTCTATGTTGGGCCACG 948
Query 959 TCTGGTTTTCCCATGATGTCAATTTGTTCTGCAATTATCGGTGTTCTAGTAAAGAATCTA 1018
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 949 TCTGGTTTCCCCATGATGTTAATTTGTTCTGCAATTATCGGTGTTCGAGTAAAGAATCTA 1008
Query 1019 AAGAT---CAAAAACATAAATATTGTGTACAGAAAATTTCATCCCTGTCTTTGCAGTCTA 1075
||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1009 AAGATGATCAAAAACATAAATATTGTGTACAGCAAATTCCATCCATGTCTTTGCAGTCTA 1068
Query 1076 G 1076
|
Sbjct 1069 G 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40944012858
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5