BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15880.1 Length=1099 Score E Sequences producing significant alignments: (Bits) Value Ahg471787 jgi|Araly1|471787|fgenesh2_kg.1__1741__AT1G15880.1 1670 0.0 > Ahg471787 jgi|Araly1|471787|fgenesh2_kg.1__1741__AT1G15880.1 Length=1069 Score = 1670 bits (904), Expect = 0.0 Identities = 1025/1081 (95%), Gaps = 17/1081 (2%) Strand=Plus/Plus Query 1 GTACGCAGAAATTCTGTCTGCGTCTCCGAACCAACTCTATCCTTCTCTCAATCCGATCCG 60 |||||||||||||||| |||||||||||||||||||| | | || | |||||||||| Sbjct 1 GTACGCAGAAATTCTGCCTGCGTCTCCGAACCAACTC--T-C-GATC-CGATCCGATCCG 55 Query 61 TTCCGTTCACTACTTGTCTCAATTTCGAACCAATTGGATCGCATCTTTTAGGGGCTCAAA 120 || || | ||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct 56 TT---TT-A-TACTTCTCTCAATTTCGAACCAATTGGATCGCATCTTTCGGGGGCTCCAA 110 Query 121 CCTTTGGTGACGAGGACGAGGAAGAAGATTGTCGCATCTGATTTATATCGGA-AAAAGGT 179 ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 111 CCTTTGGTGACGAAGACGAGGAGGAAGATTGTCGCATCTGATTTATATCGGAGAAAAGGT 170 Query 180 CTCTTGCCGGAAAGGACACGATCCGCTTTCATAAAGGAGAGATTTTGACAGATTCAGTAG 239 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 171 CTCTTGCCGGAAAAGACACGATCCGCTTTCATAAAGGAGAGATTTTTACAGATTCAGTGG 230 Query 240 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 290 Query 300 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCCACAAAGGCTTTATCAA 359 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 291 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCAACAAAGGCTTTATCAA 350 Query 360 AATCAGATGGTA-ATGAGAGTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTG 418 | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 351 AGTCAGATGGTTCA-GAGACTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTC 409 Query 419 CAACAAGTTAATGCTCAGATGCAAGCATGGGTATCTTCTGGTGGGTCAGAAATGGTCTCC 478 |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 410 CAACAAGTTAATGCCCAGATGCAAGCATGGGTTTCTTCAGGTGGATCAGAAATGGTCTCC 469 Query 479 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 529 Query 539 CGCTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 598 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 CGGTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 589 Query 599 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAAGCCCTGATCAAGGAA 658 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 590 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAATCCCTGATCAAGGAA 649 Query 659 CATATGGGAATCAACCGCAATACAGCTCAGATGGACGGTGTCATTTCACAAGCTCAGGCA 718 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| Sbjct 650 CATATGGGAATCAACCGCAATACGGCACAAATGGATGGTGTCATTTCACAAGCTCAGGCA 709 Query 719 ACACTCGGTACGCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 778 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 ACACTCGGTACTCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 769 Query 779 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAGAGGAAAAAG 838 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 770 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAAAGGAAAAAG 829 Query 839 TCGATGGATACAATCATTCTTTCACTCGTTGCGGCTGTATGCACATTTCTCATATTCATT 898 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 830 TCGATGGATACAATCATTCTTTCACTTGTTGCGGCTGTATGCACATTTCTCATATTCATT 889 Query 899 TACTGGATAACCAAGTAGAATTTGCCCATTTCTTTCGTTTCATCTTTATGTTGGGCCACG 958 |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| Sbjct 890 TACTGGATAACCAAGTAGAATTTGCCCATT-CTTTCGTCTCATCTCTATGTTGGGCCACG 948 Query 959 TCTGGTTTTCCCATGATGTCAATTTGTTCTGCAATTATCGGTGTTCTAGTAAAGAATCTA 1018 |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 949 TCTGGTTTCCCCATGATGTTAATTTGTTCTGCAATTATCGGTGTTCGAGTAAAGAATCTA 1008 Query 1019 AAGAT---CAAAAACATAAATATTGTGTACAGAAAATTTCATCCCTGTCTTTGCAGTCTA 1075 ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 1009 AAGATGATCAAAAACATAAATATTGTGTACAGCAAATTCCATCCATGTCTTTGCAGTCTA 1068 Query 1076 G 1076 | Sbjct 1069 G 1069 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40944012858 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5