BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15900.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312580 jgi|Araly1|312580|fgenesh1_pm.C_scaffold_1001360           510    2e-144


> Ahg312580 jgi|Araly1|312580|fgenesh1_pm.C_scaffold_1001360
Length=342

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 321/343 (94%), Gaps = 2/343 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGACGCAATTTCATGGCGGCGATGGAGAAGATCCTTGGCTAGCTCG-AGACAAACT  59
            |||||||||||||||||||||||||| | ||||||||||||||| ||| | ||||||| |
Sbjct  1    ATGGAGACGCAATTTCATGGCGGCGAAGAAGAAGATCCTTGGCTCGCT-GCAGACAAAGT  59

Query  60   ATACCATGTAATAttctgcttctcaatctctcttatcttctctactctcgcctctttctc  119
             ||||||||| ||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct  60   CTACCATGTAGTATTCTGCTTCTCCATCTCTCTTCTCCTCTCTACTCTCGCCTCTCTCTC  119

Query  120  ccgctactcctttctACGCCGTCACTCCATCTGGATCGGATCTGCTTTCTCACTCGCCGC  179
             ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  120  ACGCTACTCCTTTCTACGCCGTCACTCCATCTGGATCGGATCTGCTTTCTCAGTCGCCGC  179

Query  180  CGGTGCGGCTAAAGAAGCTGCCGATCAAATTGGTATCTTCCCTTCCGCAGGTGCTTCCGT  239
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  180  CGGTGCGGCAAAAGAAGCTGCCGATCAATTTGGTATCTTCCCTTCCGCAGGTGCTTCCGC  239

Query  240  TAGAGACGCCGTCGCGGACGCCATTGGAGTTGTGATAGCTGCTTTGGTTCTCCTCCTCTG  299
            |||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct  240  TAGAGACGCCGTCGCGGACGCCATTGGAGTTGTGATCGCTGCTTTGGTTATCTTCCTCTG  299

Query  300  GAAATCTCGAAGATCACGTACCCGACCCATCCTTCCGATTTGA  342
            |||||||||  ||||||||||||||||||||||||||||||||
Sbjct  300  GAAATCTCGCCGATCACGTACCCGACCCATCCTTCCGATTTGA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5