BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15910.1
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471789 jgi|Araly1|471789|fgenesh2_kg.1__1743__AT1G15910.1 3125 0.0
Ahg913582 jgi|Araly1|913582|Al_scaffold_0001_3836 294 2e-78
> Ahg471789 jgi|Araly1|471789|fgenesh2_kg.1__1743__AT1G15910.1
Length=2300
Score = 3125 bits (1692), Expect = 0.0
Identities = 2132/2334 (91%), Gaps = 72/2334 (3%)
Strand=Plus/Plus
Query 11 TTCCCTAACTCTTGTTTTATT---G-----GCATAGAAATTTTCTTCGGA-TCCTCCTCA 61
||||||||||||||||||||| | ||||||||| |||| ||||| ||||| |||
Sbjct 1 TTCCCTAACTCTTGTTTTATTGGCGCATTTGCATAGAAA-TTTCATCGGATTCCTCATCA 59
Query 62 CTGTCTCTCTATACTC-CACTCTTCATCAAGCGTTGGGTCATCGCC-G-TCTTC-CCTTT 117
| |||||| | ||| | ||||||||||||| |||||| | | || | | ||| || |
Sbjct 60 GTCCCTCTCTCT-CTCTCTCTCTTCATCAAGCTTTGGGTAAGCTCCAGAT-TTCTTCTAT 117
Query 118 CCTTCCCTCTCTAACGTAAAGCAGGTAGGATGAGCA-TT--TCTGATGAAGAGGCTGAGA 174
| || | | | ||||||||||||||||||| | | || |||||||||||| ||||||
Sbjct 118 AC-TCTGT-TTTCACGTAAAGCAGGTAGGATGGGTATTTCATCTGATGAAGAGTCTGAGA 175
Query 175 TCAGCGAGTCAGAGATTGAGGACTATTCTGAAACACCCTACC-GCCTTTTACGCGACGGG 233
|||||||||| |||||||| |||||||| ||||||||||||| | ||||||||| | |||
Sbjct 176 TCAGCGAGTCTGAGATTGATGACTATTCCGAAACACCCTACCTG-CTTTTACGCAATGGG 234
Query 234 A-CTTACAAGGTGAAGGTGAATGGACAGCTCAGATGCCCGTTTTGTGCAGGCAAGAAGAA 292
| | |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 AGC-TACAAGGTCAAGGTTAATGGACAGCTCAGATGCCCGTTTTGTTCAGGCAAGAAGAA 293
Query 293 GCAAGATTACAAGTACAAGGAGTTGTATGCACATGCTACTGGGGTTTCCAAAGGTTCTGC 352
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 294 GCAAGATTACAAGTACAAGGAGTTATATGCACATGCTACTGGTGTTTCCAAAGGATCTGC 353
Query 353 CACCAGAAGTGCTTTACAGAAGGCTAATCATCTTGCTTTAGCTATGTTTTTAGAGAATGA 412
|| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 354 CAGCAGAAGTGCTAAACAGAAGGCTAATCATCTTGCTTTAGCTAAGTTTTTAGAGAATGA 413
Query 413 GCTTGCTGGTTATGCAGAACCTGTTCCACGCCCTCCAGTTGTTCCTCCTCAGTTAGACGA 472
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 414 GCTTGCTGGTTATGCAGAACCTCTTCCACGCCCTCCAGTTGTTCCTCCTCAGTTTGACGA 473
Query 473 GACTGAACCAAACCCTCATAACGTCTATGTCTGGCCATGGATGGGGATTGTTGTTAACCC 532
||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 474 GACTGAACCAAACCCTCATGACGTCTATGTCTGGCCATGGATGGCGATTGTTCTTAACCC 533
Query 533 TTTGAAAGAAGCGGATGACAAGGAACTTCTACTTGATTCAGCATATTGGCTGCAGACCCT 592
|||||||||| | ||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 534 TTTGAAAGAAACAGATGACAAGGAACTTCTACTTGATTCAGCATTTTGGTTGAAGACCCT 593
Query 593 TTCCAAATTCAAGCCTATTGAGGTGAATGCCTTTTGGGTCGAACAAGATTCGATTGTTGG 652
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 594 TTCCAAATTCAAGCCTATTGAGGTGAATGCCTTTTGGCTCGAACAAGATTCTATTGTTGG 653
Query 653 GGTTATTGCTAAGTTTAACGGAGACTGGAGTGGCTTTGCTGGTGCCACAGAGCTTGAAAA 712
|||||||||||||||| || | ||||||||||| ||||| |||||||||||||||||||
Sbjct 654 GGTTATTGCTAAGTTTCACAGCGACTGGAGTGGGTTTGCCAGTGCCACAGAGCTTGAAAA 713
Query 713 AGAATTTGAGACCCAAGGGTCCAGCAAAAAGGAGTGGACTGAGAGGAGCGGAGATTCAGA 772
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGAATTTGAGACCCAAGGCTCCAGCAAAAAGGAGTGGACTGAGAGGAGCGGAGATTCAGA 773
Query 773 GTCAAAGGCCTATGGTTGGTGTGCACGTGCAGACGACTTTGAA-TCTCAAGGTCCAATAG 831
|||||||||||||||||||||||||||||| || |||||| || ||||||| ||||||||
Sbjct 774 GTCAAAGGCCTATGGTTGGTGTGCACGTGCTGAAGACTTT-AACTCTCAAGATCCAATAG 832
Query 832 GTGAGTACCTCTCCAAGGAGGGACAGCTAAGAACAGTTTCAGATATTTCGCaa-aaaaaT 890
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 833 GTGAGTACCTCTCCAAGGAGGGACAGCTAAGAACAGTTTCAGATGTTTTGCAAGAAAAA- 891
Query 891 GTGCAGGATAGAAACACTGTTCTGGAAGAACTTTCAGATATGATTGCTATGACAAACGAA 950
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 892 GTGCAGGATAGAAACACTGTTCTGGACGAACTTTCAAATATGATTGCTATGACAAACGAA 951
Query 951 GATCTGAACAAGGTCCAATACAGTTACAACAGGACGGCAATGTCACTGCAAAGGGTCCTA 1010
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 952 GATCTGAACAAGGTCCAATACAGTTACAACAAGACGGCAATGTCACTGCAAAGGGTCCTA 1011
Query 1011 GATGAGaaaaaaaaCTTGCACCAAGCTTTTGCTGACGAAACAAAGAAGATGCAGCAGATG 1070
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GACGAGAAAAAAAGCTTGCACGAAGCTTTTGCTGACGAAACAAAGAAGATGCAGCAGATG 1071
Query 1071 TCACTTCGCCATATCCAGAAA-ATCCTATATGATAAAGAGAAGCTAAGCAATGAACTGGA 1129
||||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||||||||||
Sbjct 1072 TCACTTCGCCATATCCA-AAAGATCCTATATGACAAAGAGAGGCTAAGCGATGAACTGGA 1130
Query 1130 TCGTAAGATGCGGGACTTGGAGTCTCGGGCCAAACAATTGGAAAAACATGAAGCACTAAC 1189
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1131 TCGTAAGATGCGGGACTTGGAGTCTCGGGCCAAACAATTGGACAAACAGGAAGCACTAAC 1190
Query 1190 TGAACTGGATAGGCAAAAGCTTGATGAAGACAAGAGAAAGAGTGATGCTATGAACAAATC 1249
||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGAACTGGAGAAACAAAAGCTCGATGAAGACAAGAGAAAGAGTGATGCTATGAACAAATC 1250
Query 1250 CCTACAGTTAGCCTCACGTGAGCAGAAAAAGGCTGACGAAAGCGTCTTGAGACTTGTAGA 1309
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1251 CCTACAGTTAGCCTCTCGTGAGCAGAAAAAGGCTGACGAAAGCGTCTTGAGACTTGTCGA 1310
Query 1310 AGAACATCAGAGGCAAAAAGAAGATGCTTTGAACAAGATCCTTCTGCTTGAGAAGCAGCT 1369
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGAGCATAAGAGGCAAAAAGAAGATGCTTTGAACAAGATCCTTCTGCTTGAGAAGCAGCT 1370
Query 1370 AGACACCAAACAGACACTGGAAATGGAGATTCAAGAGCTAAAAGGCAAATTACAAGTGAT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1371 AGACACCAAACAGACACTGGAAATGGAGATTCAAGAGCTAAAAGGCAAATTGCAAGTGAT 1430
Query 1430 GAAGCATCTGGGGgatgatgatgatgaggcggtccagaagaaaatgaaagagatgaatga 1489
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1431 GAAGCATTTGGGGGATGATGATGATGAGGCGGTCAAGAAGAAAATGCAAGAGATGAATGA 1490
Query 1490 tgagctggatgaCAAGAAAGCTGAGTTAGAAGGGCTAGAA-AGTATGAACTCAGTCTTGA 1548
||||||| | || |||||| |||||||||||| |||||| || |||||||||||| |||
Sbjct 1491 TGAGCTGAAGGAAAAGAAATCTGAGTTAGAAGAGCTAGAGGAG-ATGAACTCAGTCCTGA 1549
Query 1549 TGACAAAAGAACGCCAAAGCAATGATGAGATACAAGCAGCGCGGAAAAAATTGATTGC-G 1607
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1550 TGACAAAAGAACGTGAAAGCAATGATGAGATACAAGCAGCGCGGAAAAAATTGATT-CAG 1608
Query 1608 GGTTTGACAGGATTGTTGGGTGCCGAGACCGATATTGGAGTAAAAAGGATGGGAGAACTT 1667
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1609 GGTTTGACAGGATTGTTGGGTGCTGAGACCGATATCGGAGTAAAAAGGATGGGAGAACTT 1668
Query 1668 GATGAGAAACCTTTCCTGGATGTTTGCAAGCTGAGATATTCTGCAAATGAAGCTGCGGTC 1727
||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1669 AATGAGAAACCTTTTCTGGATGTTTGCAAGCTGAGATATTCTGCAAATGATGCTACGGTT 1728
Query 1728 GAAGCTGCCACCCTTTGCTCTACATGGCAGGAGAACCTTAAGAATCCATCATGGCAACCA 1787
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1729 GAAGCTGCCACCCTTTGCTCGACATGGCAGGAGAACCTCAAGAATCCATCATGGCAACCA 1788
Query 1788 TTCAAGCATGAAGGAACCGGGGATGGAGCAGAGGAAGTGGTAGACGAGGATGATGAGCAG 1847
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1789 TTCAAGCGTGAAGGAACCGGGGACAGAGCAAAGGAAGTGGTAGACGAGGATGATGAGCAG 1848
Query 1848 CTGAAGAAGCTTAAAAGAGAGTGGGGTA-AAGAGGTGCATAACGCAGTAAAAACAGCTCT 1906
||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1849 CTGAAGAAGCTTAAAGGAGAGTGGGG-AGAAGAGGTGCATAACGCAGTAAAAACAGCTCT 1907
Query 1907 TGTGGAGATGAATGAGTATAATGCAAGTGGTCGGTACACAACTCCAGAACTGTGGAACTT 1966
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGGGGAGATGAATGAGTATAATGCAAGTGGTCGGTACACAACTCCAGAACTGTGGAACTT 1967
Query 1967 CAAAGAAGGAAGAAAAGCCACTCTGAAGGAAGTGATTACCTTCATTTCGAAC-GACATAA 2025
|||||||||||||||||| || ||||||||||||||||| |||||||| ||| || || |
Sbjct 1968 CAAAGAAGGAAGAAAAGCAACACTGAAGGAAGTGATTACGTTCATTTC-AACCGAGATCA 2026
Query 2026 AAATTCTGAAACGCAAAAGAACCTGAAGGTATGCTAAATCTTCTACAGTTGACACAGGTC 2085
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2027 AAAGTCTGAAACGCAAAAGAACCTGAAGGTATGCTAAATCTTGTTCAGTTGACACAGGTC 2086
Query 2086 TCCTTATAAACACTC-A------GA-AA-CGTGTAAGA---GTCTTTATAAGGTTTAGGG 2133
|||||||| |||||| | || || ||||||||| | |||||||||||||||||
Sbjct 2087 TCCTTATACACACTCCATAATCTGAGAAACGTGTAAGAAAAGGCTTTATAAGGTTTAGGG 2146
Query 2134 TAGAAACTCGTCAACAAATACTGCAGAGGCATGATCTCTTTTGTTGACTTCAGTTAAAGA 2193
| | ||||||||||| |||||||||||||| |||||||||| |||| ||
Sbjct 2147 T-----C-----AACAAATACTGAAGAGGCATGATCTCGCTTGTTGACTTGAGTTCAA-- 2194
Query 2194 ACTTGAATTATGATCTGGTCTGGCTTTGTTCTTGTGCCATTTTGATTTGAACTGAAGAAT 2253
| ||| ||||||||||||||| | ||||||| ||||||||| |||||||||||||
Sbjct 2195 --T--AAT---GATCTGGTCTGGCTTAGGTCTTGTGTCATTTTGATATGAACTGAAGAAT 2247
Query 2254 CCAATGGTCTTCTACTTTTGGTTGCTGGATTGGAGAA-GCAGGAAGAAGAGGAA 2306
||||||||||||||||||||||||| ||||||||| | | |||||||||| |||
Sbjct 2248 CCAATGGTCTTCTACTTTTGGTTGCAGGATTGGAGGATG-AGGAAGAAGAAGAA 2300
> Ahg913582 jgi|Araly1|913582|Al_scaffold_0001_3836
Length=453
Score = 294 bits (159), Expect = 2e-78
Identities = 210/234 (90%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 1821 GAAGTGGTAGACGAGGATGATGAGCAGCTGAAGAAGCTTAAAAGAGAGTGGGGTA-AAGA 1879
|||||||| |||||||| |||||||||||||| ||||||||| |||||||||| | ||||
Sbjct 223 GAAGTGGTTGACGAGGAGGATGAGCAGCTGAATAAGCTTAAAGGAGAGTGGGG-AGAAGA 281
Query 1880 GGTGCATAACGCAGTAAAAACAGCTCTTGTGGAGATGAATGAGTATAATGCAAGTGGTCG 1939
||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 282 GGTGCATAATGAAGTTAAAACAGATCTTGAGGAGATGAATGAGTATAATGCAAGTGGTCG 341
Query 1940 GTACACAACTCCAGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCCACT-CTGAAGGAAG 1998
|||||||| || ||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 342 GTACACAAATCTAGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCAA-TACTGAAGGAAG 400
Query 1999 TGATTACCTTCATTTC-GAACGACATAAAAATTCTGAAACGCAAAAGAACCTGA 2051
|| ||| ||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 401 TGTTTAGTTTCATTTTAGA-CGACATCAAAACTCTGAAACGCAAAAGAACCTGA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92445024615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5